-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_577

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_577-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 185, 1842
Sorry, prediction snap_scaffold_577-snap.2-T1 fails validation.
(CAG)	 AG	185-1842	GT	GAG
-recovered snap_scaffold_577-snap.2-T1, internal, 185, 1842
Couldn't classify 185, 854
Sorry, prediction Augustus_model.g40054.t1 fails validation.
(CAG)	 AG	185-854	GT	CGG
(CTT)	 AG	1395-1857	CT	GAC
-recovered Augustus_model.g40054.t1, terminal, 1395, 1857
-recovered Augustus_model.g40054.t1, internal, 185, 854
Valid prediction for GlimmerHMM_glimmerT_60509-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60509-T1 185-1857-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5148, rend_intergenic: 3807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5648
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5148, rend_intergenic: 3807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support