-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_576

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40053.t1
Couldn't classify 773, 794
Couldn't classify 1675, 1746
Sorry, prediction pasa_asmbl_46601.p1 fails validation.
(TCC)	 CC	773-794	GT	AGG
(CAG)	 AG	1151-1273	GT	AGG
(ATA)	 AG	1413-1576	GT	AGG
(CAT)	 AG	1675-1746	TA	CCT
-recovered pasa_asmbl_46601.p1, internal, 1151, 1273
-recovered pasa_asmbl_46601.p1, internal, 1413, 1576
Valid prediction for snap_scaffold_576-snap.1-T1
Couldn't classify 4287, 4450
Couldn't classify 5107, 5157
Sorry, prediction pasa_asmbl_46600.p1 fails validation.
(CAC)	 AC	4287-4450	GT	CGG
(TAT)	 AG	4552-4630	GT	AGG
(TCT)	 AG	4711-4869	GT	CGG
(GAG)	 AG	5107-5157	GC	CTG
-recovered pasa_asmbl_46600.p1, internal, 4552, 4630
-recovered pasa_asmbl_46600.p1, internal, 4711, 4869
-recovered pasa_asmbl_46600.p1, internal, 5107, 5157
Couldn't classify 578, 794
Sorry, prediction GlimmerHMM_glimmerT_60508-T1 fails validation.
(ATC)	 AG	578-794	GT	AGG
(CAG)	 AG	1151-1273	GT	AGG
(ATA)	 AG	1413-1576	GT	AGG
(CAT)	 AG	1675-1751	GT	AGG
(GTG)	 AG	2927-3151	GT	CGG
(GAA)	 AG	4283-4379	GT	GGG
(TCT)	 AG	4711-4869	GT	CGG
(GAG)	 AG	5107-5469	TG	AGT
-recovered GlimmerHMM_glimmerT_60508-T1, terminal, 5107, 5469
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 578, 794
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 1151, 1273
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 1413, 1576
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 1675, 1751
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 2927, 3151
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 4283, 4379
-recovered GlimmerHMM_glimmerT_60508-T1, internal, 4711, 4869

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5681
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support