-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_575

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 767, 1016
Couldn't classify 5539, 5593
Sorry, prediction snap_scaffold_575-snap.1-T1 fails validation.
(GCG)	 AG	767-1016	GT	CGG
(GTT)	 AG	2053-2215	GT	GAG
(CGT)	 AG	3042-3758	GT	ATG
(GAC)	 AG	3834-3856	GT	CGG
(GGT)	 AG	4478-4649	GT	CTG
(AGC)	 AG	5539-5593	GT	AGG
-recovered snap_scaffold_575-snap.1-T1, internal, 767, 1016
-recovered snap_scaffold_575-snap.1-T1, internal, 2053, 2215
-recovered snap_scaffold_575-snap.1-T1, internal, 3042, 3758
-recovered snap_scaffold_575-snap.1-T1, internal, 3834, 3856
-recovered snap_scaffold_575-snap.1-T1, internal, 4478, 4649
-recovered snap_scaffold_575-snap.1-T1, internal, 5539, 5593
Valid prediction for GlimmerHMM_glimmerT_60507-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60506-T1
Couldn't classify 131, 240
Sorry, prediction snap_scaffold_575-snap.2-T1 fails validation.
(TGC)	 AG	131-240	GT	AGG
(CGT)	 AG	852-1327	GT	AGG
(CTT)	 AG	3503-3665	CA	GAC
-recovered snap_scaffold_575-snap.2-T1, terminal, 3503, 3665
-recovered snap_scaffold_575-snap.2-T1, internal, 131, 240
-recovered snap_scaffold_575-snap.2-T1, internal, 852, 1327

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5593, rend_intergenic: 2041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5705
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5593, rend_intergenic: 2041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support