-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_574

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 276, 417
Sorry, prediction Augustus_model.g40052.t1 fails validation.
(AAT)	 AG	276-417	GT	AGG
(AAA)	 AG	521-708	GT	AGG
(GGC)	 AG	833-969	GT	GGG
(TAC)	 AG	1162-1245	GT	TTG
(GGG)	 AG	1718-1977	GT	AGG
(GGA)	 AG	2989-3179	GG	GAG
add_exon() Sorry, Augustus_model.g40052.t1 1718-1977-terminal-2 is invalid.
-recovered Augustus_model.g40052.t1, terminal, 1718, 1977
-recovered Augustus_model.g40052.t1, terminal, 2989, 3179
-recovered Augustus_model.g40052.t1, internal, 276, 417
-recovered Augustus_model.g40052.t1, internal, 521, 708
-recovered Augustus_model.g40052.t1, internal, 833, 969
-recovered Augustus_model.g40052.t1, internal, 1162, 1245
-recovered Augustus_model.g40052.t1, internal, 1718, 1977
Couldn't classify 276, 417
Sorry, prediction snap_scaffold_574-snap.1-T1 fails validation.
(AAT)	 AG	276-417	GT	AGG
(AAA)	 AG	521-708	GT	AGG
(GGC)	 AG	833-969	GT	GGG
(TAC)	 AG	1162-1245	GT	TTG
(GGG)	 AG	1718-1977	GT	AGG
(GGA)	 AG	2989-3179	GG	GAG
add_exon() Sorry, snap_scaffold_574-snap.1-T1 1718-1977-terminal-2 is invalid.
-recovered snap_scaffold_574-snap.1-T1, terminal, 1718, 1977
-recovered snap_scaffold_574-snap.1-T1, terminal, 2989, 3179
-recovered snap_scaffold_574-snap.1-T1, internal, 276, 417
-recovered snap_scaffold_574-snap.1-T1, internal, 521, 708
-recovered snap_scaffold_574-snap.1-T1, internal, 833, 969
-recovered snap_scaffold_574-snap.1-T1, internal, 1162, 1245
-recovered snap_scaffold_574-snap.1-T1, internal, 1718, 1977
Valid prediction for GlimmerHMM_glimmerT_60504-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_574-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60505-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3179, rend_intergenic: 1508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5720
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3179, rend_intergenic: 1508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support