-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_573

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1403, 1489
Sorry, prediction GlimmerHMM_glimmerT_60503-T1 fails validation.
(GGA)	 AG	1403-1489	GT	AGG
(TTC)	 AG	1581-1667	GT	AAG
(ATG)	 AG	1991-2110	GT	AGG
(GAG)	 AG	2201-2338	GT	AGG
(GGC)	 AG	2447-2498	GT	AGG
(ATG)	 AG	2865-3397	AA	AAA
-recovered GlimmerHMM_glimmerT_60503-T1, initial, 1991, 2110
-recovered GlimmerHMM_glimmerT_60503-T1, terminal, 2865, 3397
-recovered GlimmerHMM_glimmerT_60503-T1, internal, 1403, 1489
-recovered GlimmerHMM_glimmerT_60503-T1, internal, 1581, 1667
-recovered GlimmerHMM_glimmerT_60503-T1, internal, 1991, 2110
-recovered GlimmerHMM_glimmerT_60503-T1, internal, 2201, 2338
-recovered GlimmerHMM_glimmerT_60503-T1, internal, 2447, 2498
Couldn't classify 2885, 3220
Sorry, prediction pasa_asmbl_46596.p1 fails validation.
(GAC)	 CA	2885-3220	CG	AGC
Couldn't classify 1934, 2110
Couldn't classify 2447, 2500
Sorry, prediction pasa_asmbl_46597.p1 fails validation.
(CAT)	 AT	1934-2110	GT	AGG
(GAG)	 AG	2201-2338	GT	AGG
(GGC)	 AG	2447-2500	GC	GTG
-recovered pasa_asmbl_46597.p1, internal, 2201, 2338
-recovered pasa_asmbl_46597.p1, internal, 2447, 2500
Valid prediction for snap_scaffold_573-snap.1-T1
Valid prediction for Augustus_model.g40051.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5722
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support