-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_571

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 21
Couldn't classify 3282, 3333
Sorry, prediction pasa_asmbl_46593.p1 fails validation.
(CGC)	 CA	1-21	GT	GAG
(AAA)	 AG	481-602	GC	AGG
(TGA)	 AG	1924-2087	GT	GGG
(GTA)	 AG	2746-2920	GT	AGG
(AAA)	 AG	3282-3333	AA	ACA
-recovered pasa_asmbl_46593.p1, internal, 481, 602
-recovered pasa_asmbl_46593.p1, internal, 1924, 2087
-recovered pasa_asmbl_46593.p1, internal, 2746, 2920
Couldn't classify 1, 21
Sorry, prediction Augustus_model.g40050.t1 fails validation.
(CGC)	 CA	1-21	GT	GAG
(AAA)	 AG	481-602	GC	AGG
(TGA)	 AG	1924-2087	GT	GGG
(GTA)	 AG	2746-2920	GT	AGG
(AAA)	 AG	3282-3363	GT	AGG
(GTT)	 AG	3959-4000	GT	AGG
(TGG)	 AG	4138-4166	GT	AGG
(GTG)	 AG	4327-4360	GT	AGG
(GTG)	 AG	4657-4785	GT	ACG
(GGG)	 AG	5434-5448	TC	AGT
-recovered Augustus_model.g40050.t1, terminal, 5434, 5448
-recovered Augustus_model.g40050.t1, internal, 481, 602
-recovered Augustus_model.g40050.t1, internal, 1924, 2087
-recovered Augustus_model.g40050.t1, internal, 2746, 2920
-recovered Augustus_model.g40050.t1, internal, 3282, 3363
-recovered Augustus_model.g40050.t1, internal, 3959, 4000
-recovered Augustus_model.g40050.t1, internal, 4138, 4166
-recovered Augustus_model.g40050.t1, internal, 4327, 4360
-recovered Augustus_model.g40050.t1, internal, 4657, 4785
Couldn't classify 481, 590
Couldn't classify 4657, 4781
Sorry, prediction snap_scaffold_571-snap.1-T1 fails validation.
(AAA)	 AG	481-590	GT	CAG
(TGA)	 AG	1924-2087	GT	GGG
(GTA)	 AG	2746-2920	GT	AGG
(AAA)	 AG	3282-3363	GT	AGG
(GTG)	 AG	4657-4781	GT	CGG
-recovered snap_scaffold_571-snap.1-T1, internal, 481, 590
-recovered snap_scaffold_571-snap.1-T1, internal, 1924, 2087
-recovered snap_scaffold_571-snap.1-T1, internal, 2746, 2920
-recovered snap_scaffold_571-snap.1-T1, internal, 3282, 3363
-recovered snap_scaffold_571-snap.1-T1, internal, 4657, 4781
Couldn't classify 4657, 4781
Sorry, prediction GlimmerHMM_glimmerT_60501-T1 fails validation.
(ATG)	 GC	2018-2087	GT	GGG
(GTA)	 AG	2746-2920	GT	AGG
(AAA)	 AG	3282-3363	GT	AGG
(GTG)	 AG	4657-4781	GT	CGG
-recovered GlimmerHMM_glimmerT_60501-T1, initial, 2018, 2087
-recovered GlimmerHMM_glimmerT_60501-T1, internal, 2746, 2920
-recovered GlimmerHMM_glimmerT_60501-T1, internal, 3282, 3363
-recovered GlimmerHMM_glimmerT_60501-T1, internal, 4657, 4781

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5743
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support