-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_570

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_570-snap.3-T1
Couldn't classify 1055, 1100
Sorry, prediction snap_scaffold_570-snap.2-T1 fails validation.
(AGT)	 AG	1055-1100	GT	AGG
(GAA)	 AG	1483-1581	GT	CGG
(GAC)	 AG	2780-3049	GT	AGG
(GAG)	 AG	4521-4665	AG	AGA
-recovered snap_scaffold_570-snap.2-T1, terminal, 4521, 4665
-recovered snap_scaffold_570-snap.2-T1, internal, 1055, 1100
-recovered snap_scaffold_570-snap.2-T1, internal, 1483, 1581
-recovered snap_scaffold_570-snap.2-T1, internal, 2780, 3049

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40049.t1
Couldn't classify 1141, 1262
Sorry, prediction GlimmerHMM_glimmerT_60500-T1 fails validation.
(CCA)	 AG	1141-1262	GT	AGG
(GCA)	 AG	2755-3006	GT	TGG
(TGT)	 AG	4048-4253	GT	AGG
(CCG)	 AG	4658-4828	CC	GAC
-recovered GlimmerHMM_glimmerT_60500-T1, terminal, 4658, 4828
-recovered GlimmerHMM_glimmerT_60500-T1, internal, 1141, 1262
-recovered GlimmerHMM_glimmerT_60500-T1, internal, 2755, 3006
-recovered GlimmerHMM_glimmerT_60500-T1, internal, 4048, 4253
Couldn't classify 1141, 1262
Sorry, prediction snap_scaffold_570-snap.1-T1 fails validation.
(CCA)	 AG	1141-1262	GT	AGG
(GCA)	 AG	2755-3006	GT	TGG
(TGT)	 AG	4048-4253	GT	AGG
(CCG)	 AG	4658-4815	GT	AGG
(CTG)	 AG	5096-5181	GT	AGG
add_exon() Sorry, snap_scaffold_570-snap.1-T1 5096-5181-terminal-2 is invalid.
-recovered snap_scaffold_570-snap.1-T1, terminal, 5096, 5181
-recovered snap_scaffold_570-snap.1-T1, internal, 1141, 1262
-recovered snap_scaffold_570-snap.1-T1, internal, 2755, 3006
-recovered snap_scaffold_570-snap.1-T1, internal, 4048, 4253
-recovered snap_scaffold_570-snap.1-T1, internal, 4658, 4815
-recovered snap_scaffold_570-snap.1-T1, internal, 5096, 5181

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4611, rend_intergenic: 1055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5751
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4611, rend_intergenic: 1055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support