-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_57

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_57-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59616-T1
Couldn't classify 25666, 25766
Sorry, prediction snap_scaffold_57-snap.6-T1 fails validation.
(ATG)	 GG	16750-16941	GT	AAG
(GGT)	 AG	19672-19796	GT	GGG
(GTC)	 AG	23041-23209	GT	AGG
(GTG)	 AG	24545-24637	GT	AGG
(GGG)	 AG	25666-25766	GT	GGG
-recovered snap_scaffold_57-snap.6-T1, initial, 16750, 16941
-recovered snap_scaffold_57-snap.6-T1, internal, 19672, 19796
-recovered snap_scaffold_57-snap.6-T1, internal, 23041, 23209
-recovered snap_scaffold_57-snap.6-T1, internal, 24545, 24637
-recovered snap_scaffold_57-snap.6-T1, internal, 25666, 25766
Valid prediction for snap_scaffold_57-snap.3-T1
Valid prediction for snap_scaffold_57-snap.1-T1
Couldn't classify 9405, 9519
Sorry, prediction CodingQuarry_transcript_52543-T1 fails validation.
(ATG)	 CA	8049-8083	GT	TGG
(GCC)	 AG	8550-8640	GT	CCG
(GGC)	 AG	9106-9299	GC	TGG
(GCA)	 CT	9405-9519	GC	AAG
-recovered CodingQuarry_transcript_52543-T1, initial, 8049, 8083
-recovered CodingQuarry_transcript_52543-T1, internal, 8550, 8640
-recovered CodingQuarry_transcript_52543-T1, internal, 9106, 9299
Valid prediction for Augustus_model.g39498.t1
Valid prediction for Augustus_model.g39501.t1
Valid prediction for snap_scaffold_57-snap.4-T1
Valid prediction for Augustus_model.g39500.t1
Valid prediction for GlimmerHMM_glimmerT_59615-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59615-T1 1808-2336-terminal-1 is invalid.
Valid prediction for Augustus_model.g39499.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59620-T1
Valid prediction for GlimmerHMM_glimmerT_59617-T1
Valid prediction for GlimmerHMM_glimmerT_59619-T1
Valid prediction for pasa_asmbl_46588.p1
Valid prediction for GlimmerHMM_glimmerT_59618-T1
Valid prediction for HiQ_model.g39502.t1
Valid prediction for Augustus_model.g39503.t1
Valid prediction for snap_scaffold_57-snap.5-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25772
-exon list size: 60


building trellis

1.6    
3.2    
4.8    
6.5    
8.1    
9.7    
11.3    
12.9    
14.5    
16.1    
17.7    
19.4    
21.0    
22.6    
24.2    
25.8    
27.4    
29.0    
30.6    
32.3    
33.9    
35.5    
37.1    
38.7    
40.3    
41.9    
43.5    
45.2    
46.8    
48.4    
50.0    
51.6    
53.2    
54.8    
56.5    
58.1    
59.7    
61.3    
62.9    
64.5    
66.1    
67.7    
69.4    
71.0    
72.6    
74.2    
75.8    
77.4    
79.0    
80.6    
82.3    
83.9    
85.5    
87.1    
88.7    
90.3    
91.9    
93.5    
95.2    
96.8    
98.4    
-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support