-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_564

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_564-snap.1-T1
Couldn't classify 5683, 5800
Sorry, prediction snap_scaffold_564-snap.2-T1 fails validation.
(ATG)	 GG	2514-2534	GT	AGG
(CCT)	 AG	3298-3357	GT	AGG
(AAG)	 AG	5010-5115	GT	CGG
(AAG)	 AG	5683-5800	GT	GGG
-recovered snap_scaffold_564-snap.2-T1, initial, 2514, 2534
-recovered snap_scaffold_564-snap.2-T1, internal, 3298, 3357
-recovered snap_scaffold_564-snap.2-T1, internal, 5010, 5115
-recovered snap_scaffold_564-snap.2-T1, internal, 5683, 5800

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 372, 456
Sorry, prediction GlimmerHMM_glimmerT_60493-T1 fails validation.
(CTC)	 AG	372-456	GT	GGG
(CCC)	 AG	4569-4701	AC	AGA
-recovered GlimmerHMM_glimmerT_60493-T1, terminal, 4569, 4701
-recovered GlimmerHMM_glimmerT_60493-T1, internal, 372, 456
Valid prediction for Augustus_model.g40045.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5826
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support