-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_560

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60489-T1
Valid prediction for snap_scaffold_560-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60488-T1
Couldn't classify 4951, 5259
Sorry, prediction pasa_asmbl_46576.p1 fails validation.
(CAG)	 AC	4951-5259	GT	TGG
Couldn't classify 5643, 5759
Sorry, prediction Augustus_model.g40043.t1 fails validation.
(ATG)	 GG	2281-2299	GT	AGG
(GTG)	 AG	4844-4967	GT	AGG
(TCC)	 AG	5103-5259	GT	TGG
(GAT)	 AG	5643-5759	GT	GTG
-recovered Augustus_model.g40043.t1, initial, 2281, 2299
-recovered Augustus_model.g40043.t1, internal, 4844, 4967
-recovered Augustus_model.g40043.t1, internal, 5103, 5259
-recovered Augustus_model.g40043.t1, internal, 5643, 5759
Couldn't classify 1392, 1517
Couldn't classify 5643, 5699
Sorry, prediction snap_scaffold_560-snap.1-T1 fails validation.
(GAG)	 AG	1392-1517	GT	ATG
(GGC)	 AG	1961-1982	GT	AGG
(GTG)	 AG	4844-4967	GT	AGG
(TCC)	 AG	5103-5259	GT	TGG
(GAT)	 AG	5643-5699	GT	GGG
-recovered snap_scaffold_560-snap.1-T1, internal, 1392, 1517
-recovered snap_scaffold_560-snap.1-T1, internal, 1961, 1982
-recovered snap_scaffold_560-snap.1-T1, internal, 4844, 4967
-recovered snap_scaffold_560-snap.1-T1, internal, 5103, 5259
-recovered snap_scaffold_560-snap.1-T1, internal, 5643, 5699

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4451, rend_intergenic: 506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5842
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4451, rend_intergenic: 506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support