-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_56

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5326, 5557
Couldn't classify 5758, 5900
Sorry, prediction pasa_asmbl_46571.p1 fails validation.
(GAA)	 AT	5326-5557	GT	TGG
(GCA)	 AG	5758-5900	GG	AAG
Valid prediction for snap_scaffold_56-snap.4-T1
Couldn't classify 15057, 15276
Couldn't classify 15481, 16085
Sorry, prediction pasa_asmbl_46574.p1 fails validation.
(TCC)	 GG	15057-15276	GT	AAG
(AAT)	 AG	15481-16085	TT	GGT
Couldn't classify 14122, 14421
Sorry, prediction pasa_asmbl_46573.p1 fails validation.
(GTG)	 CA	14122-14421	TT	AGT
Valid prediction for Augustus_model.g39494.t1
Valid prediction for GlimmerHMM_glimmerT_59611-T1
Valid prediction for Augustus_model.g39496.t1
Valid prediction for snap_scaffold_56-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_59613-T1
Valid prediction for Augustus_model.g39497.t1
Valid prediction for snap_scaffold_56-snap.3-T1
Valid prediction for snap_scaffold_56-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59614-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39495.t1
Valid prediction for GlimmerHMM_glimmerT_59609-T1
Valid prediction for GlimmerHMM_glimmerT_59610-T1
Valid prediction for HiQ_model.g39493.t1
Valid prediction for GlimmerHMM_glimmerT_59612-T1
Valid prediction for snap_scaffold_56-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25895
-exon list size: 48


building trellis

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-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support