-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_557 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60484-T1 Couldn't classify 5802, 5870 Sorry, prediction Augustus_model.g40039.t1 fails validation. (ATG) GA 4160-4270 GT AGG (GTG) AG 4490-4662 GT CAG (ATT) AG 4914-4989 GT AGG (GTG) AG 5188-5361 GT AGG (CTG) AG 5533-5658 GT AGG (GTT) AG 5802-5870 GT AGG -recovered Augustus_model.g40039.t1, initial, 4160, 4270 -recovered Augustus_model.g40039.t1, internal, 4490, 4662 -recovered Augustus_model.g40039.t1, internal, 4914, 4989 -recovered Augustus_model.g40039.t1, internal, 5188, 5361 -recovered Augustus_model.g40039.t1, internal, 5533, 5658 -recovered Augustus_model.g40039.t1, internal, 5802, 5870 Couldn't classify 1, 196 Sorry, prediction Augustus_model.g40040.t1 fails validation. (TCC) CA 1-196 GT AGG (GTT) AG 3914-3955 CC AAC -recovered Augustus_model.g40040.t1, terminal, 3914, 3955 Valid prediction for GlimmerHMM_glimmerT_60483-T1 Couldn't classify 4927, 4989 Couldn't classify 5802, 5867 Sorry, prediction pasa_asmbl_46563.p1 fails validation. (AAG) AG 4927-4989 GT AGG (GTG) AG 5188-5361 GT AGG (CTG) AG 5533-5658 GT AGG (GTT) AG 5802-5867 GA CCG -recovered pasa_asmbl_46563.p1, internal, 4927, 4989 -recovered pasa_asmbl_46563.p1, internal, 5188, 5361 -recovered pasa_asmbl_46563.p1, internal, 5533, 5658 Couldn't classify 5802, 5870 Sorry, prediction snap_scaffold_557-snap.1-T1 fails validation. (ATG) GA 4160-4270 GT AGG (GTG) AG 4490-4662 GT CAG (ATT) AG 4914-4989 GT AGG (GTG) AG 5188-5361 GT AGG (CTG) AG 5533-5658 GT AGG (GTT) AG 5802-5870 GT AGG -recovered snap_scaffold_557-snap.1-T1, initial, 4160, 4270 -recovered snap_scaffold_557-snap.1-T1, internal, 4490, 4662 -recovered snap_scaffold_557-snap.1-T1, internal, 4914, 4989 -recovered snap_scaffold_557-snap.1-T1, internal, 5188, 5361 -recovered snap_scaffold_557-snap.1-T1, internal, 5533, 5658 -recovered snap_scaffold_557-snap.1-T1, internal, 5802, 5870 Couldn't classify 20, 196 Sorry, prediction snap_scaffold_557-snap.2-T1 fails validation. (GAT) AG 20-196 GT AGG (GAG) AG 3329-3352 AT AAA -recovered snap_scaffold_557-snap.2-T1, terminal, 3329, 3352 -recovered snap_scaffold_557-snap.2-T1, internal, 20, 196 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 5891 -exon list size: 19 building trellis 4.8 9.5 14.3 19.0 23.8 28.6 33.3 38.1 42.9 47.6 52.4 57.1 61.9 66.7 71.4 76.2 81.0 85.7 90.5 95.2 -found 2 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support