-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 227
Sorry, prediction snap_scaffold_555-snap.2-T1 fails validation.
(CTG)	 AG	133-227	GT	GGG
(TCG)	 AG	362-491	GT	TCG
(GAA)	 AG	3328-3430	GT	CGG
(GGT)	 AG	5286-5355	GG	AAG
-recovered snap_scaffold_555-snap.2-T1, terminal, 5286, 5355
-recovered snap_scaffold_555-snap.2-T1, internal, 133, 227
-recovered snap_scaffold_555-snap.2-T1, internal, 362, 491
-recovered snap_scaffold_555-snap.2-T1, internal, 3328, 3430

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 151, 184
Sorry, prediction GlimmerHMM_glimmerT_60482-T1 fails validation.
(ATT)	 AG	151-184	GT	CAG
(GTG)	 AG	2417-2616	CA	GAC
-recovered GlimmerHMM_glimmerT_60482-T1, terminal, 2417, 2616
-recovered GlimmerHMM_glimmerT_60482-T1, internal, 151, 184
Valid prediction for Augustus_model.g40038.t1
Valid prediction for GlimmerHMM_glimmerT_60481-T1
Valid prediction for snap_scaffold_555-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3115, rend_intergenic: 133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5908
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3115, rend_intergenic: 133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support