-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_552

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5020, 5382
Sorry, prediction snap_scaffold_552-snap.3-T1 fails validation.
(ATG)	 GA	4769-4793	GT	AGG
(AGA)	 AG	5020-5382	GT	AGG
-recovered snap_scaffold_552-snap.3-T1, initial, 4769, 4793
-recovered snap_scaffold_552-snap.3-T1, internal, 5020, 5382
Valid prediction for Augustus_model.g40036.t1
Valid prediction for snap_scaffold_552-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1735, 1824
Sorry, prediction GlimmerHMM_glimmerT_60479-T1 fails validation.
(TAC)	 AG	1735-1824	GT	CGG
(CGT)	 AG	5661-5805	AG	AGA
-recovered GlimmerHMM_glimmerT_60479-T1, terminal, 5661, 5805
-recovered GlimmerHMM_glimmerT_60479-T1, internal, 1735, 1824
Couldn't classify 5673, 5849
Sorry, prediction snap_scaffold_552-snap.1-T1 fails validation.
(ATG)	 GA	2737-2751	GT	TGG
(AGA)	 AG	5673-5849	GT	CAG
-recovered snap_scaffold_552-snap.1-T1, initial, 2737, 2751
-recovered snap_scaffold_552-snap.1-T1, internal, 5673, 5849

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3203, rend_intergenic: 226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5939
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3203, rend_intergenic: 226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support