-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_551

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40035.t1
Couldn't classify 1941, 2043
Couldn't classify 4880, 4976
Sorry, prediction snap_scaffold_551-snap.2-T1 fails validation.
(ACA)	 AG	1941-2043	GT	TGG
(GAC)	 AG	2151-2286	GT	CAG
(GGT)	 AG	2789-2892	GT	AGG
(TTT)	 AG	4705-4768	GT	TGG
(AGC)	 AG	4810-4836	GT	TGG
(GTC)	 AG	4880-4976	GT	AAG
-recovered snap_scaffold_551-snap.2-T1, internal, 1941, 2043
-recovered snap_scaffold_551-snap.2-T1, internal, 2151, 2286
-recovered snap_scaffold_551-snap.2-T1, internal, 2789, 2892
-recovered snap_scaffold_551-snap.2-T1, internal, 4705, 4768
-recovered snap_scaffold_551-snap.2-T1, internal, 4810, 4836
-recovered snap_scaffold_551-snap.2-T1, internal, 4880, 4976
Valid prediction for GlimmerHMM_glimmerT_60477-T1
Couldn't classify 2733, 2892
Sorry, prediction GlimmerHMM_glimmerT_60478-T1 fails validation.
(ATG)	 TG	2122-2288	GT	GTG
(TGA)	 AG	2733-2892	GT	AGG
-recovered GlimmerHMM_glimmerT_60478-T1, initial, 2122, 2288
-recovered GlimmerHMM_glimmerT_60478-T1, internal, 2733, 2892

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_551-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4455, rend_intergenic: 1941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5941
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4455, rend_intergenic: 1941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support