-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_550

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1406, 1579
Couldn't classify 5731, 5855
Sorry, prediction snap_scaffold_550-snap.2-T1 fails validation.
(GGC)	 AG	1406-1579	GT	TTG
(CTA)	 AG	4797-4844	GT	AGG
(CGA)	 AG	5731-5855	GT	ATG
-recovered snap_scaffold_550-snap.2-T1, internal, 1406, 1579
-recovered snap_scaffold_550-snap.2-T1, internal, 4797, 4844
-recovered snap_scaffold_550-snap.2-T1, internal, 5731, 5855
Valid prediction for Augustus_model.g40034.t1
Valid prediction for GlimmerHMM_glimmerT_60476-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4533, 4669
Couldn't classify 5523, 5617
Sorry, prediction snap_scaffold_550-snap.1-T1 fails validation.
(AGG)	 AG	4533-4669	GT	AGG
(AAC)	 AG	5523-5617	GT	TGG
-recovered snap_scaffold_550-snap.1-T1, internal, 4533, 4669
-recovered snap_scaffold_550-snap.1-T1, internal, 5523, 5617

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1418, rend_intergenic: 1406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5950
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1418, rend_intergenic: 1406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support