-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_548

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4181, 4278
Sorry, prediction snap_scaffold_548-snap.1-T1 fails validation.
(ATG)	 CG	3905-4006	GT	CAG
(GCC)	 AG	4181-4278	GT	AGG
-recovered snap_scaffold_548-snap.1-T1, initial, 3905, 4006
-recovered snap_scaffold_548-snap.1-T1, internal, 4181, 4278

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 387, 454
Sorry, prediction GlimmerHMM_glimmerT_60474-T1 fails validation.
(GGG)	 AG	387-454	GT	AAG
(CAC)	 AG	551-613	AG	GAA
-recovered GlimmerHMM_glimmerT_60474-T1, terminal, 551, 613
-recovered GlimmerHMM_glimmerT_60474-T1, internal, 387, 454

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5960
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support