-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_547

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5175, 5306
Sorry, prediction snap_scaffold_547-snap.1-T1 fails validation.
(ATG)	 TG	2600-2657	GT	TAG
(CGT)	 AG	4996-5105	GT	CGG
(GCA)	 AG	5112-5167	GT	CGG
(ACA)	 AG	5175-5306	GT	GGG
-recovered snap_scaffold_547-snap.1-T1, initial, 2600, 2657
-recovered snap_scaffold_547-snap.1-T1, internal, 4996, 5105
-recovered snap_scaffold_547-snap.1-T1, internal, 5112, 5167
-recovered snap_scaffold_547-snap.1-T1, internal, 5175, 5306
Sorry, intron length (5) is less than minimum required (10)
Sorry, intron length (6) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 789, 1039
Sorry, prediction GlimmerHMM_glimmerT_60473-T1 fails validation.
(CTC)	 AG	789-1039	GT	TTG
(CAG)	 AG	1520-1602	GT	AGG
(CTA)	 AG	4001-4216	GT	TGG
(TCC)	 AG	5783-5942	AG	AGA
-recovered GlimmerHMM_glimmerT_60473-T1, terminal, 5783, 5942
-recovered GlimmerHMM_glimmerT_60473-T1, internal, 789, 1039
-recovered GlimmerHMM_glimmerT_60473-T1, internal, 1520, 1602
-recovered GlimmerHMM_glimmerT_60473-T1, internal, 4001, 4216
Couldn't classify 324, 412
Sorry, prediction snap_scaffold_547-snap.2-T1 fails validation.
(GAA)	 AG	324-412	GT	ACG
(CTC)	 AG	789-1025	GT	AGG
(TGC)	 AG	1555-1610	CT	AAC
-recovered snap_scaffold_547-snap.2-T1, terminal, 1555, 1610
-recovered snap_scaffold_547-snap.2-T1, internal, 324, 412
-recovered snap_scaffold_547-snap.2-T1, internal, 789, 1025
Couldn't classify 324, 412
Sorry, prediction Augustus_model.g40032.t1 fails validation.
(GAA)	 AG	324-412	GT	ACG
(CTC)	 AG	789-1025	GT	AGG
(TGC)	 AG	1555-1610	CT	AAC
-recovered Augustus_model.g40032.t1, terminal, 1555, 1610
-recovered Augustus_model.g40032.t1, internal, 324, 412
-recovered Augustus_model.g40032.t1, internal, 789, 1025

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 4375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5984
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 4375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support