-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_545

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60471-T1
Couldn't classify 1121, 1237
Sorry, prediction Augustus_model.g40031.t1 fails validation.
(GTG)	 AG	1121-1237	GT	GTG
(ATG)	 AG	1668-1759	GT	AAG
(AGT)	 AG	1928-2297	AG	AGA
-recovered Augustus_model.g40031.t1, initial, 1668, 1759
-recovered Augustus_model.g40031.t1, terminal, 1928, 2297
-recovered Augustus_model.g40031.t1, internal, 1121, 1237
-recovered Augustus_model.g40031.t1, internal, 1668, 1759

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5070, 5156
Sorry, prediction snap_scaffold_545-snap.1-T1 fails validation.
(ATG)	 AG	3929-4027	GT	CGG
(GGA)	 AG	5070-5156	GT	TCG
-recovered snap_scaffold_545-snap.1-T1, initial, 3929, 4027
-recovered snap_scaffold_545-snap.1-T1, internal, 3929, 4027
-recovered snap_scaffold_545-snap.1-T1, internal, 5070, 5156

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6000
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support