-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_540

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60467-T1
Valid prediction for snap_scaffold_540-snap.1-T1
add_exon() Sorry, snap_scaffold_540-snap.1-T1 48-690-initial-1 is invalid.
Valid prediction for Augustus_model.g40028.t1
add_exon() Sorry, Augustus_model.g40028.t1 48-634-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g40028.t1 1093-1172-terminal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40029.t1
Couldn't classify 893, 1051
Sorry, prediction GlimmerHMM_glimmerT_60468-T1 fails validation.
(GAA)	 AG	893-1051	GT	AGG
(GAG)	 AG	1185-1301	GT	CTG
(GTG)	 AG	1391-1535	GT	AGG
(TGG)	 AG	1743-1849	GT	AGG
(ATG)	 AG	2653-2763	GG	AAG
-recovered GlimmerHMM_glimmerT_60468-T1, terminal, 2653, 2763
-recovered GlimmerHMM_glimmerT_60468-T1, internal, 893, 1051
-recovered GlimmerHMM_glimmerT_60468-T1, internal, 1185, 1301
-recovered GlimmerHMM_glimmerT_60468-T1, internal, 1391, 1535
-recovered GlimmerHMM_glimmerT_60468-T1, internal, 1743, 1849
Valid prediction for snap_scaffold_540-snap.2-T1
Couldn't classify 1391, 1534
Sorry, prediction pasa_asmbl_46554.p1 fails validation.
(ATG)	 CC	555-590	GT	AGG
(GAA)	 AG	893-1051	GT	AGG
(GAG)	 AG	1185-1301	GT	CTG
(GTG)	 AG	1391-1534	GG	AAG
-recovered pasa_asmbl_46554.p1, initial, 555, 590
-recovered pasa_asmbl_46554.p1, internal, 893, 1051
-recovered pasa_asmbl_46554.p1, internal, 1185, 1301

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3399, rend_intergenic: 301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6000
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3399, rend_intergenic: 301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support