-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_54

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_54-snap.7-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 74, 110
Sorry, prediction snap_scaffold_54-snap.9-T1 fails validation.
(TCA)	 AG	74-110	GT	AGG
(AAC)	 AG	191-1157	GT	AGG
(GCC)	 AG	1365-1735	GG	GAG
-recovered snap_scaffold_54-snap.9-T1, terminal, 1365, 1735
-recovered snap_scaffold_54-snap.9-T1, internal, 74, 110
-recovered snap_scaffold_54-snap.9-T1, internal, 191, 1157
Valid prediction for GlimmerHMM_glimmerT_59594-T1
Valid prediction for snap_scaffold_54-snap.2-T1
Valid prediction for Augustus_model.g39480.t1
Valid prediction for snap_scaffold_54-snap.3-T1
Valid prediction for snap_scaffold_54-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59593-T1
Valid prediction for GlimmerHMM_glimmerT_59595-T1
Valid prediction for snap_scaffold_54-snap.5-T1
Valid prediction for snap_scaffold_54-snap.4-T1
Couldn't classify 26933, 26997
Sorry, prediction snap_scaffold_54-snap.1-T1 fails validation.
(ATG)	 GG	26383-26617	GT	AGG
(GAG)	 AG	26933-26997	GT	CGG
-recovered snap_scaffold_54-snap.1-T1, initial, 26383, 26617
-recovered snap_scaffold_54-snap.1-T1, internal, 26933, 26997
Valid prediction for GlimmerHMM_glimmerT_59596-T1
Couldn't classify 191, 1157
Sorry, prediction Augustus_model.g39483.t1 fails validation.
(AAC)	 AG	191-1157	GT	AGG
(GCC)	 AG	1365-1722	GT	CAG
(CTC)	 AG	1979-2087	GT	TGG
(AAG)	 AG	2216-2321	GT	AAG
(GTC)	 AG	2510-2652	AG	AGA
-recovered Augustus_model.g39483.t1, terminal, 2510, 2652
-recovered Augustus_model.g39483.t1, internal, 191, 1157
-recovered Augustus_model.g39483.t1, internal, 1365, 1722
-recovered Augustus_model.g39483.t1, internal, 1979, 2087
-recovered Augustus_model.g39483.t1, internal, 2216, 2321
Valid prediction for HiQ_model.g39481.t1
Couldn't classify 20027, 20280
Sorry, prediction pasa_asmbl_46552.p1 fails validation.
(ATG)	 TA	19758-19812	GT	CTG
(TGA)	 AG	20027-20280	GA	GGG
-recovered pasa_asmbl_46552.p1, initial, 19758, 19812
Valid prediction for Augustus_model.g39482.t1
Valid prediction for snap_scaffold_54-snap.8-T1
Couldn't classify 191, 1157
Sorry, prediction GlimmerHMM_glimmerT_59597-T1 fails validation.
(AAC)	 AG	191-1157	GT	AGG
(GCC)	 AG	1365-1735	GG	GAG
-recovered GlimmerHMM_glimmerT_59597-T1, terminal, 1365, 1735
-recovered GlimmerHMM_glimmerT_59597-T1, internal, 191, 1157

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 27500
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 8 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support