-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_536

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5268, 5320
Sorry, prediction snap_scaffold_536-snap.2-T1 fails validation.
(ATG)	 AC	2927-3067	GT	TGG
(GAA)	 AG	4096-4363	GT	AAG
(AGA)	 AG	4786-4907	GT	AGG
(CGG)	 AG	5268-5320	GT	AGG
-recovered snap_scaffold_536-snap.2-T1, initial, 2927, 3067
-recovered snap_scaffold_536-snap.2-T1, internal, 4096, 4363
-recovered snap_scaffold_536-snap.2-T1, internal, 4786, 4907
-recovered snap_scaffold_536-snap.2-T1, internal, 5268, 5320
Valid prediction for snap_scaffold_536-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60461-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60461-T1 2142-2407-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60462-T1
Valid prediction for Augustus_model.g40024.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6025
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support