-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_535

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 213, 308
Couldn't classify 3485, 3609
Sorry, prediction snap_scaffold_535-snap.2-T1 fails validation.
(CGT)	 AG	213-308	GT	TCG
(GTT)	 AG	3485-3609	GT	TTG
-recovered snap_scaffold_535-snap.2-T1, internal, 213, 308
-recovered snap_scaffold_535-snap.2-T1, internal, 3485, 3609

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5718, 5844
Sorry, prediction Augustus_model.g40023.t1 fails validation.
(ATG)	 TA	2992-3024	GT	CGG
(GTG)	 AG	3195-3290	GT	AGG
(ATC)	 AG	3370-3600	GT	AGG
(AAC)	 AG	3687-3709	GT	AGG
(AGC)	 AG	3779-3897	GT	CAG
(TGA)	 AG	3961-4043	GT	CAG
(CTG)	 AG	5229-5303	GT	AGG
(GGG)	 AG	5718-5844	GT	AGG
-recovered Augustus_model.g40023.t1, initial, 2992, 3024
-recovered Augustus_model.g40023.t1, internal, 3195, 3290
-recovered Augustus_model.g40023.t1, internal, 3370, 3600
-recovered Augustus_model.g40023.t1, internal, 3687, 3709
-recovered Augustus_model.g40023.t1, internal, 3779, 3897
-recovered Augustus_model.g40023.t1, internal, 3961, 4043
-recovered Augustus_model.g40023.t1, internal, 5229, 5303
-recovered Augustus_model.g40023.t1, internal, 5718, 5844
Valid prediction for GlimmerHMM_glimmerT_60460-T1
Couldn't classify 5718, 5844
Sorry, prediction snap_scaffold_535-snap.1-T1 fails validation.
(ATG)	 AA	2429-2640	GT	CTG
(GGA)	 AG	2763-2883	GT	AGG
(GTG)	 AG	3195-3290	GT	AGG
(ATC)	 AG	3370-3600	GT	AGG
(AAC)	 AG	3687-3709	GT	AGG
(AGC)	 AG	3779-3897	GT	CAG
(TGA)	 AG	3961-4043	GT	CAG
(CTG)	 AG	5229-5303	GT	AGG
(GGG)	 AG	5718-5844	GT	AGG
-recovered snap_scaffold_535-snap.1-T1, initial, 2429, 2640
-recovered snap_scaffold_535-snap.1-T1, internal, 2763, 2883
-recovered snap_scaffold_535-snap.1-T1, internal, 3195, 3290
-recovered snap_scaffold_535-snap.1-T1, internal, 3370, 3600
-recovered snap_scaffold_535-snap.1-T1, internal, 3687, 3709
-recovered snap_scaffold_535-snap.1-T1, internal, 3779, 3897
-recovered snap_scaffold_535-snap.1-T1, internal, 3961, 4043
-recovered snap_scaffold_535-snap.1-T1, internal, 5229, 5303
-recovered snap_scaffold_535-snap.1-T1, internal, 5718, 5844

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3606, rend_intergenic: 213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6034
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3606, rend_intergenic: 213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support