-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_533

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60458-T1
Couldn't classify 148, 189
Couldn't classify 2960, 2971
Sorry, prediction snap_scaffold_533-snap.2-T1 fails validation.
(AAT)	 AG	148-189	GT	AGG
(CGC)	 AG	1222-1365	GT	CTG
(CGC)	 AG	1578-1616	GT	AAG
(GTT)	 AG	2960-2971	GT	TGG
-recovered snap_scaffold_533-snap.2-T1, internal, 148, 189
-recovered snap_scaffold_533-snap.2-T1, internal, 1222, 1365
-recovered snap_scaffold_533-snap.2-T1, internal, 1578, 1616
-recovered snap_scaffold_533-snap.2-T1, internal, 2960, 2971

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 85, 182
Sorry, prediction snap_scaffold_533-snap.1-T1 fails validation.
(GGA)	 AG	85-182	GT	TCG
(GCG)	 AG	4633-4981	GT	AGG
(GAG)	 AG	5808-5904	AA	GAA
-recovered snap_scaffold_533-snap.1-T1, terminal, 5808, 5904
-recovered snap_scaffold_533-snap.1-T1, internal, 85, 182
-recovered snap_scaffold_533-snap.1-T1, internal, 4633, 4981

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5955, rend_intergenic: 148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6039
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5955, rend_intergenic: 148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support