-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_528-snap.1-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_60456-T1
Couldn't classify 5231, 5406
Sorry, prediction snap_scaffold_528-snap.3-T1 fails validation.
(ATG)	 AC	2535-2599	GT	AGG
(AAA)	 AG	5231-5406	GT	AAG
-recovered snap_scaffold_528-snap.3-T1, initial, 2535, 2599
-recovered snap_scaffold_528-snap.3-T1, internal, 5231, 5406

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60455-T1
Couldn't classify 5073, 5387
Sorry, prediction Augustus_model.g40021.t1 fails validation.
(ATG)	 GG	2688-2697	GT	AGG
(GTC)	 AG	3495-3556	GT	AGG
(GTG)	 AG	5073-5387	GT	CAG
-recovered Augustus_model.g40021.t1, initial, 2688, 2697
-recovered Augustus_model.g40021.t1, internal, 3495, 3556
-recovered Augustus_model.g40021.t1, internal, 5073, 5387
Couldn't classify 5073, 5387
Sorry, prediction snap_scaffold_528-snap.2-T1 fails validation.
(ATG)	 AG	2455-2536	GT	GGG
(GTC)	 AG	3495-3556	GT	AGG
(GTG)	 AG	5073-5387	GT	CAG
-recovered snap_scaffold_528-snap.2-T1, initial, 2455, 2536
-recovered snap_scaffold_528-snap.2-T1, internal, 2455, 2536
-recovered snap_scaffold_528-snap.2-T1, internal, 3495, 3556
-recovered snap_scaffold_528-snap.2-T1, internal, 5073, 5387

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2476, rend_intergenic: 695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3627, rend_intergenic: 2535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6081
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 2476, rend_intergenic: 695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3627, rend_intergenic: 2535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support