-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_526

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40019.t1
Valid prediction for GlimmerHMM_glimmerT_60453-T1
Couldn't classify 2012, 2533
Sorry, prediction snap_scaffold_526-snap.3-T1 fails validation.
(CCC)	 AG	2012-2533	GT	GGG
(ATC)	 AG	4618-5096	GT	GGG
(GGG)	 AG	5682-5851	GT	AGG
add_exon() Sorry, snap_scaffold_526-snap.3-T1 5682-5851-terminal-2 is invalid.
-recovered snap_scaffold_526-snap.3-T1, terminal, 5682, 5851
-recovered snap_scaffold_526-snap.3-T1, internal, 2012, 2533
-recovered snap_scaffold_526-snap.3-T1, internal, 4618, 5096
-recovered snap_scaffold_526-snap.3-T1, internal, 5682, 5851

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60452-T1
Couldn't classify 274, 434
Sorry, prediction snap_scaffold_526-snap.2-T1 fails validation.
(ATT)	 AG	274-434	GT	TGG
(ACC)	 AG	999-1339	GT	AGG
(GGG)	 AG	1494-1844	GT	GGG
(ATG)	 AG	3547-4099	GG	GAG
-recovered snap_scaffold_526-snap.2-T1, terminal, 3547, 4099
-recovered snap_scaffold_526-snap.2-T1, internal, 274, 434
-recovered snap_scaffold_526-snap.2-T1, internal, 999, 1339
-recovered snap_scaffold_526-snap.2-T1, internal, 1494, 1844
Valid prediction for Augustus_model.g40018.t1
Valid prediction for snap_scaffold_526-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5830, rend_intergenic: 2012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6103
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5830, rend_intergenic: 2012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support