-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_525

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 107, 142
Sorry, prediction snap_scaffold_525-snap.1-T1 fails validation.
(GCA)	 AG	107-142	GT	CGG
(TAG)	 AG	354-477	GT	AGG
(AGT)	 AG	2974-3323	GT	GGG
(CGG)	 AG	4467-4525	TG	GAT
-recovered snap_scaffold_525-snap.1-T1, terminal, 4467, 4525
-recovered snap_scaffold_525-snap.1-T1, internal, 107, 142
-recovered snap_scaffold_525-snap.1-T1, internal, 354, 477
-recovered snap_scaffold_525-snap.1-T1, internal, 2974, 3323
Couldn't classify 2974, 3323
Sorry, prediction GlimmerHMM_glimmerT_60451-T1 fails validation.
(ATG)	 CC	133-317	GT	GTG
(AGT)	 AG	2974-3323	GT	GGG
-recovered GlimmerHMM_glimmerT_60451-T1, initial, 133, 317
-recovered GlimmerHMM_glimmerT_60451-T1, internal, 2974, 3323

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6115
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support