-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 129, 503
Sorry, prediction snap_scaffold_523-snap.2-T1 fails validation.
(GTG)	 AG	129-503	GT	CAG
(GGT)	 AG	711-791	GT	GGG
(GTT)	 AG	1152-1288	GT	GCG
(GAC)	 AG	1293-1383	GT	ACG
(CGA)	 AG	1702-1785	GT	ACG
(GGC)	 AG	3143-3239	GT	GGG
(GGG)	 AG	3377-3433	GT	GGG
(ACA)	 AG	5133-5599	AA	GAA
-recovered snap_scaffold_523-snap.2-T1, terminal, 5133, 5599
-recovered snap_scaffold_523-snap.2-T1, internal, 129, 503
-recovered snap_scaffold_523-snap.2-T1, internal, 711, 791
-recovered snap_scaffold_523-snap.2-T1, internal, 1152, 1288
-recovered snap_scaffold_523-snap.2-T1, internal, 1293, 1383
-recovered snap_scaffold_523-snap.2-T1, internal, 1702, 1785
-recovered snap_scaffold_523-snap.2-T1, internal, 3143, 3239
-recovered snap_scaffold_523-snap.2-T1, internal, 3377, 3433
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4343, 4544
Sorry, prediction GlimmerHMM_glimmerT_60448-T1 fails validation.
(GTA)	 AG	4343-4544	GT	AGG
(CCG)	 AG	4768-5009	GT	CGG
(ACT)	 AG	5652-6112	AC	GAA
-recovered GlimmerHMM_glimmerT_60448-T1, terminal, 5652, 6112
-recovered GlimmerHMM_glimmerT_60448-T1, internal, 4343, 4544
-recovered GlimmerHMM_glimmerT_60448-T1, internal, 4768, 5009
Couldn't classify 4372, 4544
Sorry, prediction pasa_asmbl_46536.p1 fails validation.
(GAA)	 CG	4372-4544	GT	AGG
(CCG)	 AG	4768-5009	GT	CGG
(ACT)	 AG	5652-6112	AC	GAA
-recovered pasa_asmbl_46536.p1, terminal, 5652, 6112
-recovered pasa_asmbl_46536.p1, internal, 4768, 5009
Couldn't classify 4343, 4544
Sorry, prediction snap_scaffold_523-snap.1-T1 fails validation.
(GTA)	 AG	4343-4544	GT	AGG
(CCG)	 AG	4768-5145	GT	AGG
(GGC)	 AG	5316-5458	GT	CAG
(ACT)	 AG	5652-6112	AC	GAA
-recovered snap_scaffold_523-snap.1-T1, terminal, 5652, 6112
-recovered snap_scaffold_523-snap.1-T1, internal, 4343, 4544
-recovered snap_scaffold_523-snap.1-T1, internal, 4768, 5145
-recovered snap_scaffold_523-snap.1-T1, internal, 5316, 5458
Valid prediction for Augustus_model.g40016.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1789, rend_intergenic: 129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6131
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1789, rend_intergenic: 129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support