-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_521

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5776, 5811
Sorry, prediction snap_scaffold_521-snap.2-T1 fails validation.
(ATG)	 AT	1809-1874	GT	GAG
(TCC)	 AG	2418-2507	GT	GGG
(CTC)	 AG	2524-2580	GT	AGG
(ATA)	 AG	3045-3186	GT	GTG
(TTC)	 AG	4280-4308	GT	AGG
(CGG)	 AG	5776-5811	GT	TGG
-recovered snap_scaffold_521-snap.2-T1, initial, 1809, 1874
-recovered snap_scaffold_521-snap.2-T1, internal, 2418, 2507
-recovered snap_scaffold_521-snap.2-T1, internal, 2524, 2580
-recovered snap_scaffold_521-snap.2-T1, internal, 3045, 3186
-recovered snap_scaffold_521-snap.2-T1, internal, 4280, 4308
-recovered snap_scaffold_521-snap.2-T1, internal, 5776, 5811
Valid prediction for snap_scaffold_521-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3475, 3699
Sorry, prediction snap_scaffold_521-snap.3-T1 fails validation.
(ATG)	 AG	1830-1983	GT	AGG
(GAC)	 AG	3475-3699	GT	GGG
-recovered snap_scaffold_521-snap.3-T1, initial, 1830, 1983
-recovered snap_scaffold_521-snap.3-T1, internal, 1830, 1983
-recovered snap_scaffold_521-snap.3-T1, internal, 3475, 3699
Valid prediction for GlimmerHMM_glimmerT_60447-T1
Valid prediction for Augustus_model.g40015.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5811, rend_intergenic: 2484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6182
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5811, rend_intergenic: 2484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support