-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_518-snap.2-T1
Valid prediction for snap_scaffold_518-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 78, 166
Sorry, prediction snap_scaffold_518-snap.3-T1 fails validation.
(AGT)	 AG	78-166	GT	GGG
(GGC)	 AG	582-790	GT	AGG
(GCG)	 AG	1100-1238	GT	AAG
(GAT)	 AG	2313-2328	TT	GAT
-recovered snap_scaffold_518-snap.3-T1, terminal, 2313, 2328
-recovered snap_scaffold_518-snap.3-T1, internal, 78, 166
-recovered snap_scaffold_518-snap.3-T1, internal, 582, 790
-recovered snap_scaffold_518-snap.3-T1, internal, 1100, 1238
Couldn't classify 105, 166
Couldn't classify 5048, 5238
Sorry, prediction Augustus_model.g40014.t1 fails validation.
(ACC)	 AG	105-166	GT	GGG
(GGC)	 AG	582-790	GT	AGG
(GCG)	 AG	1100-1238	GT	AAG
(GAT)	 AG	3453-3644	GT	GGG
(GTG)	 AG	5048-5238	GT	AGG
-recovered Augustus_model.g40014.t1, internal, 105, 166
-recovered Augustus_model.g40014.t1, internal, 582, 790
-recovered Augustus_model.g40014.t1, internal, 1100, 1238
-recovered Augustus_model.g40014.t1, internal, 3453, 3644
-recovered Augustus_model.g40014.t1, internal, 5048, 5238
Couldn't classify 105, 166
Sorry, prediction GlimmerHMM_glimmerT_60446-T1 fails validation.
(ACC)	 AG	105-166	GT	GGG
(GGC)	 AG	582-790	GT	AGG
(GCG)	 AG	1100-1238	GT	AAG
(GAT)	 AG	3453-3644	GT	GGG
(AGC)	 AG	4391-4475	GT	AAG
-recovered GlimmerHMM_glimmerT_60446-T1, terminal, 4391, 4475
-recovered GlimmerHMM_glimmerT_60446-T1, internal, 105, 166
-recovered GlimmerHMM_glimmerT_60446-T1, internal, 582, 790
-recovered GlimmerHMM_glimmerT_60446-T1, internal, 1100, 1238
-recovered GlimmerHMM_glimmerT_60446-T1, internal, 3453, 3644
-recovered GlimmerHMM_glimmerT_60446-T1, internal, 4391, 4475
Couldn't classify 5048, 5240
Sorry, prediction pasa_asmbl_46519.p1 fails validation.
(ATG)	 GG	3454-3644	GT	GGG
(GTG)	 AG	5048-5240	AC	GTA
-recovered pasa_asmbl_46519.p1, initial, 3454, 3644

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5702, rend_intergenic: 3901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6228
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5702, rend_intergenic: 3901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support