-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_516

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5168, 5289
Couldn't classify 6140, 6217
Sorry, prediction snap_scaffold_516-snap.2-T1 fails validation.
(AAT)	 AG	5168-5289	GT	AGG
(GCA)	 AG	6140-6217	GT	GGG
-recovered snap_scaffold_516-snap.2-T1, internal, 5168, 5289
-recovered snap_scaffold_516-snap.2-T1, internal, 6140, 6217

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40013.t1
add_exon() Sorry, Augustus_model.g40013.t1 101-306-terminal-1 is invalid.
Couldn't classify 101, 287
Sorry, prediction snap_scaffold_516-snap.1-T1 fails validation.
(TGT)	 AG	101-287	GT	GGG
(AGT)	 AG	983-1097	GT	CAG
(ATG)	 AG	3365-3379	TT	AAT
-recovered snap_scaffold_516-snap.1-T1, terminal, 3365, 3379
-recovered snap_scaffold_516-snap.1-T1, internal, 101, 287
-recovered snap_scaffold_516-snap.1-T1, internal, 983, 1097

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6152, rend_intergenic: 5168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6252
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6152, rend_intergenic: 5168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support