-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6062, 6179
Sorry, prediction Augustus_model.g40012.t1 fails validation.
(ATG)	 AT	216-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3800	GT	AGG
(GTG)	 AG	4272-4317	GT	AGG
(GAG)	 AG	5432-5556	GT	AGG
(GTA)	 AG	6062-6179	GT	AGG
-recovered Augustus_model.g40012.t1, initial, 216, 338
-recovered Augustus_model.g40012.t1, initial, 3649, 3800
-recovered Augustus_model.g40012.t1, internal, 435, 560
-recovered Augustus_model.g40012.t1, internal, 3452, 3529
-recovered Augustus_model.g40012.t1, internal, 3649, 3800
-recovered Augustus_model.g40012.t1, internal, 4272, 4317
-recovered Augustus_model.g40012.t1, internal, 5432, 5556
-recovered Augustus_model.g40012.t1, internal, 6062, 6179
Couldn't classify 207, 338
Couldn't classify 6062, 6179
Sorry, prediction snap_scaffold_514-snap.1-T1 fails validation.
(GAG)	 AG	207-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3800	GT	AGG
(GTG)	 AG	4272-4317	GT	AGG
(GAG)	 AG	5432-5556	GT	AGG
(GTA)	 AG	6062-6179	GT	AGG
-recovered snap_scaffold_514-snap.1-T1, initial, 3649, 3800
-recovered snap_scaffold_514-snap.1-T1, internal, 207, 338
-recovered snap_scaffold_514-snap.1-T1, internal, 435, 560
-recovered snap_scaffold_514-snap.1-T1, internal, 3452, 3529
-recovered snap_scaffold_514-snap.1-T1, internal, 3649, 3800
-recovered snap_scaffold_514-snap.1-T1, internal, 4272, 4317
-recovered snap_scaffold_514-snap.1-T1, internal, 5432, 5556
-recovered snap_scaffold_514-snap.1-T1, internal, 6062, 6179
Couldn't classify 207, 338
Sorry, prediction GlimmerHMM_glimmerT_60445-T1 fails validation.
(GAG)	 AG	207-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3816	GT	TGG
(GAG)	 AG	5432-5560	GT	AGG
-recovered GlimmerHMM_glimmerT_60445-T1, initial, 3649, 3816
-recovered GlimmerHMM_glimmerT_60445-T1, terminal, 5432, 5560
-recovered GlimmerHMM_glimmerT_60445-T1, internal, 207, 338
-recovered GlimmerHMM_glimmerT_60445-T1, internal, 435, 560
-recovered GlimmerHMM_glimmerT_60445-T1, internal, 3452, 3529
-recovered GlimmerHMM_glimmerT_60445-T1, internal, 3649, 3816
-recovered GlimmerHMM_glimmerT_60445-T1, internal, 5432, 5560

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6261
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support