-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_510

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 248, 299
Couldn't classify 1686, 1807
Sorry, prediction snap_scaffold_510-snap.1-T1 fails validation.
(ATC)	 AG	248-299	GT	AGG
(CGG)	 AG	1380-1665	GT	TCG
(CTG)	 AG	1686-1807	GT	GGG
-recovered snap_scaffold_510-snap.1-T1, internal, 248, 299
-recovered snap_scaffold_510-snap.1-T1, internal, 1380, 1665
-recovered snap_scaffold_510-snap.1-T1, internal, 1686, 1807

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4149, 4324
Sorry, prediction GlimmerHMM_glimmerT_60441-T1 fails validation.
(GGC)	 AG	4149-4324	GT	CGG
(GAG)	 AG	4563-4693	GT	GAG
-recovered GlimmerHMM_glimmerT_60441-T1, terminal, 4563, 4693
-recovered GlimmerHMM_glimmerT_60441-T1, internal, 4149, 4324
-recovered GlimmerHMM_glimmerT_60441-T1, internal, 4563, 4693
Couldn't classify 4653, 4689
Sorry, prediction snap_scaffold_510-snap.2-T1 fails validation.
(ATG)	 AC	2967-3004	GT	AGG
(TGG)	 AG	3740-3760	GT	AAG
(GGC)	 AG	4149-4324	GT	CGG
(CTG)	 AG	4653-4689	GT	GAG
-recovered snap_scaffold_510-snap.2-T1, initial, 2967, 3004
-recovered snap_scaffold_510-snap.2-T1, internal, 3740, 3760
-recovered snap_scaffold_510-snap.2-T1, internal, 4149, 4324
-recovered snap_scaffold_510-snap.2-T1, internal, 4653, 4689
Valid prediction for Augustus_model.g40010.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1807, rend_intergenic: 1649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6337
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1807, rend_intergenic: 1649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support