-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_507

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 50, 156
Sorry, prediction Augustus_model.g40007.t1 fails validation.
(GGT)	 AG	50-156	GT	ATG
(TGC)	 AG	471-611	GT	CGG
(ACC)	 AG	1140-1271	GT	GGG
(GAG)	 AG	1370-1498	GT	AGG
(GTT)	 AG	2009-2137	GT	AGG
(GTT)	 AG	3015-3143	GT	AGG
(AGC)	 AG	3550-3690	GT	CGG
(ACT)	 AG	4147-4226	GT	AGG
(GAG)	 AG	4346-4399	CC	GAC
-recovered Augustus_model.g40007.t1, terminal, 4346, 4399
-recovered Augustus_model.g40007.t1, internal, 50, 156
-recovered Augustus_model.g40007.t1, internal, 471, 611
-recovered Augustus_model.g40007.t1, internal, 1140, 1271
-recovered Augustus_model.g40007.t1, internal, 1370, 1498
-recovered Augustus_model.g40007.t1, internal, 2009, 2137
-recovered Augustus_model.g40007.t1, internal, 3015, 3143
-recovered Augustus_model.g40007.t1, internal, 3550, 3690
-recovered Augustus_model.g40007.t1, internal, 4147, 4226
Couldn't classify 6164, 6279
Sorry, prediction Augustus_model.g40008.t1 fails validation.
(ATG)	 CG	4891-4920	GT	GGG
(GAC)	 AG	6164-6279	GT	CGG
-recovered Augustus_model.g40008.t1, initial, 4891, 4920
-recovered Augustus_model.g40008.t1, internal, 6164, 6279
Valid prediction for GlimmerHMM_glimmerT_60437-T1
Couldn't classify 6164, 6279
Sorry, prediction GlimmerHMM_glimmerT_60438-T1 fails validation.
(ATG)	 CG	4891-4920	GT	GGG
(GAC)	 AG	6164-6279	GT	CGG
-recovered GlimmerHMM_glimmerT_60438-T1, initial, 4891, 4920
-recovered GlimmerHMM_glimmerT_60438-T1, internal, 6164, 6279
Valid prediction for snap_scaffold_507-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6166, 6320
Sorry, prediction snap_scaffold_507-snap.1-T1 fails validation.
(ATG)	 AC	2114-2612	GT	CGG
(TTA)	 AG	6166-6320	GT	CTG
-recovered snap_scaffold_507-snap.1-T1, initial, 2114, 2612
-recovered snap_scaffold_507-snap.1-T1, internal, 6166, 6320

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4254, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6367
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4254, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support