-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_501

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3478, 3670
Sorry, prediction snap_scaffold_501-snap.1-T1 fails validation.
(ATG)	 GG	11-203	GT	AGG
(ATA)	 AG	1995-2328	GT	TTG
(GCT)	 AG	3478-3670	GT	TGG
-recovered snap_scaffold_501-snap.1-T1, initial, 11, 203
-recovered snap_scaffold_501-snap.1-T1, internal, 1995, 2328
-recovered snap_scaffold_501-snap.1-T1, internal, 3478, 3670

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 364, 420
Couldn't classify 3167, 3350
Sorry, prediction snap_scaffold_501-snap.2-T1 fails validation.
(GGC)	 AG	364-420	GT	TGG
(CCT)	 AG	2619-2918	GT	TCG
(TAG)	 AG	2968-3105	GT	TGG
(AGT)	 AG	3167-3350	GT	GTG
-recovered snap_scaffold_501-snap.2-T1, internal, 364, 420
-recovered snap_scaffold_501-snap.2-T1, internal, 2619, 2918
-recovered snap_scaffold_501-snap.2-T1, internal, 2968, 3105
-recovered snap_scaffold_501-snap.2-T1, internal, 3167, 3350
Couldn't classify 2384, 3060
Sorry, prediction GlimmerHMM_glimmerT_60430-T1 fails validation.
(CCT)	 AG	2384-3060	GT	AGG
(GAG)	 AG	6185-6222	GT	GAG
-recovered GlimmerHMM_glimmerT_60430-T1, terminal, 6185, 6222
-recovered GlimmerHMM_glimmerT_60430-T1, internal, 2384, 3060
-recovered GlimmerHMM_glimmerT_60430-T1, internal, 6185, 6222

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3670, rend_intergenic: 3084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6433
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3670, rend_intergenic: 3084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support