-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_500

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_500-snap.2-T1
Valid prediction for CodingQuarry_transcript_52494-T1
Couldn't classify 3, 246
Sorry, prediction pasa_asmbl_46492.p1 fails validation.
(GGG)	 GT	3-246	GT	AGG
(CGA)	 AG	419-745	GT	AGG
(GAG)	 AG	1075-1182	GT	AGG
(GTG)	 AG	1274-1333	GT	AGG
(GCG)	 AG	1626-1696	CT	AAC
-recovered pasa_asmbl_46492.p1, terminal, 1626, 1696
-recovered pasa_asmbl_46492.p1, internal, 419, 745
-recovered pasa_asmbl_46492.p1, internal, 1075, 1182
-recovered pasa_asmbl_46492.p1, internal, 1274, 1333
Valid prediction for snap_scaffold_500-snap.1-T1
Couldn't classify 1, 246
Sorry, prediction HiQ_model.g40002.t1 fails validation.
(GTG)	 GA	1-246	GT	AGG
(CGA)	 AG	419-745	GT	AGG
(GAG)	 AG	1075-1182	GT	AGG
(GTG)	 AG	1274-1333	GT	AGG
(GCG)	 AG	1626-1696	CT	AAC
-recovered HiQ_model.g40002.t1, terminal, 1626, 1696
-recovered HiQ_model.g40002.t1, internal, 419, 745
-recovered HiQ_model.g40002.t1, internal, 1075, 1182
-recovered HiQ_model.g40002.t1, internal, 1274, 1333
Valid prediction for Augustus_model.g40003.t1
Couldn't classify 3957, 4167
Sorry, prediction pasa_asmbl_46498.p1 fails validation.
(AGT)	 GC	3957-4167	GT	AGG
(CTC)	 AG	4364-4669	GT	AGG
(CAG)	 AG	4826-4921	GT	AAG
(AAG)	 AG	5038-5117	TT	AAT
-recovered pasa_asmbl_46498.p1, terminal, 5038, 5117
-recovered pasa_asmbl_46498.p1, internal, 4364, 4669
-recovered pasa_asmbl_46498.p1, internal, 4826, 4921
Valid prediction for GlimmerHMM_glimmerT_60429-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6433
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support