-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_50 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39465.t1 Valid prediction for snap_scaffold_50-snap.3-T1 Valid prediction for snap_scaffold_50-snap.6-T1 Valid prediction for Augustus_model.g39463.t1 Couldn't classify 734, 812 Sorry, prediction snap_scaffold_50-snap.2-T1 fails validation. (CTC) AG 734-812 GT AGG (ATG) AG 3647-3762 GT ACG (ACA) AG 4329-4375 GT CAG (ATT) AG 6389-6401 GT GAG add_exon() Sorry, snap_scaffold_50-snap.2-T1 3647-3762-initial-1 is invalid. -recovered snap_scaffold_50-snap.2-T1, initial, 3647, 3762 -recovered snap_scaffold_50-snap.2-T1, terminal, 6389, 6401 -recovered snap_scaffold_50-snap.2-T1, internal, 734, 812 -recovered snap_scaffold_50-snap.2-T1, internal, 3647, 3762 -recovered snap_scaffold_50-snap.2-T1, internal, 4329, 4375 -recovered snap_scaffold_50-snap.2-T1, internal, 6389, 6401 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_52493-T1 Couldn't classify 27610, 27734 Sorry, prediction snap_scaffold_50-snap.1-T1 fails validation. (ATG) CG 24561-24747 GT TGG (GCT) AG 25974-26035 GT AGG (TGG) AG 26317-26400 GT AGG (GAG) AG 27610-27734 GT AGG -recovered snap_scaffold_50-snap.1-T1, initial, 24561, 24747 -recovered snap_scaffold_50-snap.1-T1, internal, 25974, 26035 -recovered snap_scaffold_50-snap.1-T1, internal, 26317, 26400 -recovered snap_scaffold_50-snap.1-T1, internal, 27610, 27734 Valid prediction for HiQ_model.g39466.t1 Valid prediction for pasa_asmbl_46485.p1 Couldn't classify 276, 415 Sorry, prediction snap_scaffold_50-snap.7-T1 fails validation. (TCC) AG 276-415 GT AGG (ATA) AG 562-719 GT AGG (GAT) AG 950-1482 GT AGG (GTG) AG 1679-1884 GT ATG (ATT) AG 1990-2150 GT AAG (GGT) AG 2375-2526 GT AGG (ACC) AG 2610-2747 GT CGG (GAG) AG 2908-3033 GT AGG (CTC) AG 3226-3500 GG AGG -recovered snap_scaffold_50-snap.7-T1, terminal, 3226, 3500 -recovered snap_scaffold_50-snap.7-T1, internal, 276, 415 -recovered snap_scaffold_50-snap.7-T1, internal, 562, 719 -recovered snap_scaffold_50-snap.7-T1, internal, 950, 1482 -recovered snap_scaffold_50-snap.7-T1, internal, 1679, 1884 -recovered snap_scaffold_50-snap.7-T1, internal, 1990, 2150 -recovered snap_scaffold_50-snap.7-T1, internal, 2375, 2526 -recovered snap_scaffold_50-snap.7-T1, internal, 2610, 2747 -recovered snap_scaffold_50-snap.7-T1, internal, 2908, 3033 Valid prediction for Augustus_model.g39467.t1 Valid prediction for GlimmerHMM_glimmerT_59582-T1 Valid prediction for snap_scaffold_50-snap.5-T1 Couldn't classify 27889, 27949 Sorry, prediction Augustus_model.g39462.t1 fails validation. (ATG) GC 24603-24773 GT TGG (TCA) AG 25964-26035 GT AGG (TGG) AG 26317-26400 GT AGG (GAG) AG 27610-27734 GT AGG (GCT) AG 27889-27949 GT AGG -recovered Augustus_model.g39462.t1, initial, 24603, 24773 -recovered Augustus_model.g39462.t1, internal, 25964, 26035 -recovered Augustus_model.g39462.t1, internal, 26317, 26400 -recovered Augustus_model.g39462.t1, internal, 27610, 27734 -recovered Augustus_model.g39462.t1, internal, 27889, 27949 Valid prediction for Augustus_model.g39464.t1 Valid prediction for snap_scaffold_50-snap.4-T1 Couldn't classify 276, 415 Sorry, prediction GlimmerHMM_glimmerT_59583-T1 fails validation. (TCC) AG 276-415 GT AGG (CAG) AG 559-719 GT AGG (GAT) AG 950-1482 GT AGG (CAG) AG 1676-1884 GT ATG (ATT) AG 1990-2150 GT AAG (GGT) AG 2375-2526 GT AGG (ACC) AG 2610-2747 GT CGG (GAG) AG 2908-3033 GT AGG (CTC) AG 3226-3496 GT GCG (AGA) AG 6917-7095 GT CAG (GAG) AG 8599-8786 GT AGG (AAC) AG 8861-8944 GT AGG (AAG) AG 9053-9163 GT AGG (GTG) AG 9279-9409 GT AGG (TGC) AG 9628-9832 GT AGG (GTC) AG 9929-10024 GT AGG (GTG) AG 10236-10422 GT CGG (AGT) AG 10538-10650 GT AGG (CTC) AG 11065-11145 GT GCG (ACC) AG 15533-15914 GT ATG (GTG) AG 16102-16643 GT CAG (TTG) AG 17596-17697 GT TAG (CGG) AG 24069-24209 CC GAC -recovered GlimmerHMM_glimmerT_59583-T1, terminal, 24069, 24209 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 276, 415 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 559, 719 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 950, 1482 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 1676, 1884 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 1990, 2150 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 2375, 2526 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 2610, 2747 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 2908, 3033 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 3226, 3496 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 6917, 7095 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 8599, 8786 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 8861, 8944 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 9053, 9163 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 9279, 9409 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 9628, 9832 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 9929, 10024 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 10236, 10422 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 10538, 10650 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 11065, 11145 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 15533, 15914 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 16102, 16643 -recovered GlimmerHMM_glimmerT_59583-T1, internal, 17596, 17697 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3830, rend_intergenic: 734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27165, rend_intergenic: 24891 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 28390 -exon list size: 97 building trellis 1.0 2.0 3.0 4.0 5.1 6.1 7.1 8.1 9.1 10.1 11.1 12.1 13.1 14.1 15.2 16.2 17.2 18.2 19.2 20.2 21.2 22.2 23.2 24.2 25.3 26.3 27.3 28.3 29.3 30.3 31.3 32.3 33.3 34.3 35.4 36.4 37.4 38.4 39.4 40.4 41.4 42.4 43.4 44.4 45.5 46.5 47.5 48.5 49.5 50.5 51.5 52.5 53.5 54.5 55.6 56.6 57.6 58.6 59.6 60.6 61.6 62.6 63.6 64.6 65.7 66.7 67.7 68.7 69.7 70.7 71.7 72.7 73.7 74.7 75.8 76.8 77.8 78.8 79.8 80.8 81.8 82.8 83.8 84.8 85.9 86.9 87.9 88.9 89.9 90.9 91.9 92.9 93.9 94.9 96.0 97.0 98.0 99.0 -found 7 predictions from path traversal Error with prediction: snap lend_intergenic: 3830, rend_intergenic: 734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27165, rend_intergenic: 24891 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 7 predictions persist after filtering for low support