-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_9862343-10025755

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_5-snap.1857-T1
Valid prediction for snap_scaffold_5-snap.1854-T1
Valid prediction for Augustus_model.g8227.t1
Valid prediction for Augustus_model.g8236.t1
Valid prediction for snap_scaffold_5-snap.1869-T1
Valid prediction for GlimmerHMM_glimmerT_12474-T1
Valid prediction for GlimmerHMM_glimmerT_12472-T1
Valid prediction for snap_scaffold_5-snap.1866-T1
Valid prediction for snap_scaffold_5-snap.1843-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_12482-T1
Valid prediction for GlimmerHMM_glimmerT_12486-T1
Valid prediction for GlimmerHMM_glimmerT_12476-T1
Valid prediction for GlimmerHMM_glimmerT_12498-T1
Valid prediction for GlimmerHMM_glimmerT_12463-T1
Valid prediction for snap_scaffold_5-snap.1870-T1
Valid prediction for snap_scaffold_5-snap.1871-T1
Valid prediction for Augustus_model.g8233.t1
Valid prediction for snap_scaffold_5-snap.1860-T1
Valid prediction for GlimmerHMM_glimmerT_12489-T1
Valid prediction for GlimmerHMM_glimmerT_12471-T1
Valid prediction for snap_scaffold_5-snap.1872-T1
Valid prediction for Augustus_model.g8237.t1
Valid prediction for GlimmerHMM_glimmerT_12494-T1
Valid prediction for Augustus_model.g8238.t1
Valid prediction for snap_scaffold_5-snap.1842-T1
Valid prediction for snap_scaffold_5-snap.1873-T1
Valid prediction for snap_scaffold_5-snap.1853-T1
Valid prediction for Augustus_model.g8232.t1
Valid prediction for snap_scaffold_5-snap.1876-T1
Valid prediction for Augustus_model.g8229.t1
Valid prediction for Augustus_model.g8226.t1
Valid prediction for snap_scaffold_5-snap.1849-T1
Valid prediction for GlimmerHMM_glimmerT_12492-T1
Valid prediction for GlimmerHMM_glimmerT_12487-T1
Valid prediction for Augustus_model.g8223.t1
Valid prediction for snap_scaffold_5-snap.1862-T1
Valid prediction for GlimmerHMM_glimmerT_12488-T1
Valid prediction for snap_scaffold_5-snap.1846-T1
Valid prediction for snap_scaffold_5-snap.1847-T1
Valid prediction for GlimmerHMM_glimmerT_12470-T1
Valid prediction for Augustus_model.g8241.t1
Valid prediction for GlimmerHMM_glimmerT_12484-T1
Valid prediction for snap_scaffold_5-snap.1859-T1
Valid prediction for snap_scaffold_5-snap.1865-T1
Valid prediction for snap_scaffold_5-snap.1852-T1
Valid prediction for GlimmerHMM_glimmerT_12485-T1
Valid prediction for snap_scaffold_5-snap.1868-T1
Valid prediction for GlimmerHMM_glimmerT_12497-T1
Valid prediction for GlimmerHMM_glimmerT_12478-T1
Valid prediction for GlimmerHMM_glimmerT_12491-T1
Valid prediction for snap_scaffold_5-snap.1845-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.1875-T1
Valid prediction for GlimmerHMM_glimmerT_12466-T1
Valid prediction for Augustus_model.g8234.t1
Valid prediction for snap_scaffold_5-snap.1863-T1
Valid prediction for Augustus_model.g8240.t1
Valid prediction for snap_scaffold_5-snap.1861-T1
Valid prediction for GlimmerHMM_glimmerT_12495-T1
Valid prediction for Augustus_model.g8235.t1
Valid prediction for Augustus_model.g8224.t1
Valid prediction for snap_scaffold_5-snap.1856-T1
Valid prediction for snap_scaffold_5-snap.1855-T1
Valid prediction for GlimmerHMM_glimmerT_12475-T1
Valid prediction for Augustus_model.g8225.t1
Valid prediction for snap_scaffold_5-snap.1864-T1
Valid prediction for GlimmerHMM_glimmerT_12483-T1
Valid prediction for snap_scaffold_5-snap.1850-T1
Valid prediction for GlimmerHMM_glimmerT_12467-T1
Valid prediction for Augustus_model.g8231.t1
Valid prediction for Augustus_model.g8242.t1
Valid prediction for GlimmerHMM_glimmerT_12481-T1
Valid prediction for GlimmerHMM_glimmerT_12496-T1
Valid prediction for GlimmerHMM_glimmerT_12469-T1
Valid prediction for GlimmerHMM_glimmerT_12480-T1
Valid prediction for Augustus_model.g8228.t1
Valid prediction for snap_scaffold_5-snap.1874-T1
Valid prediction for GlimmerHMM_glimmerT_12499-T1
Valid prediction for GlimmerHMM_glimmerT_12493-T1
Valid prediction for GlimmerHMM_glimmerT_12468-T1
Valid prediction for GlimmerHMM_glimmerT_12464-T1
Valid prediction for snap_scaffold_5-snap.1851-T1
Valid prediction for Augustus_model.g8230.t1
Valid prediction for snap_scaffold_5-snap.1848-T1
Valid prediction for GlimmerHMM_glimmerT_12465-T1
Valid prediction for GlimmerHMM_glimmerT_12473-T1
Valid prediction for snap_scaffold_5-snap.1844-T1
Valid prediction for snap_scaffold_5-snap.1867-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_12490-T1
Valid prediction for Augustus_model.g8239.t1
Valid prediction for GlimmerHMM_glimmerT_12477-T1
Valid prediction for GlimmerHMM_glimmerT_12479-T1
Valid prediction for snap_scaffold_5-snap.1858-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22821, rend_intergenic: 15867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25438, rend_intergenic: 22853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35425, rend_intergenic: 32669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37144, rend_intergenic: 35888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44623, rend_intergenic: 37313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68067, rend_intergenic: 44648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78011, rend_intergenic: 71286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85226, rend_intergenic: 79800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92653, rend_intergenic: 86501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94046, rend_intergenic: 92703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99686, rend_intergenic: 98634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103434, rend_intergenic: 100713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108785, rend_intergenic: 104821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113942, rend_intergenic: 112226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144128, rend_intergenic: 114200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148476, rend_intergenic: 146021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155779, rend_intergenic: 150327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 163413
-exon list size: 368


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.1    
5.4    
5.7    
5.9    
6.2    
6.5    
6.8    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.7    
10.0    
10.3    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.8    
14.1    
14.3    
14.6    
14.9    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.4    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.6    
28.9    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.1    
71.4    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.6    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.2    
93.5    
93.8    
94.1    
94.3    
94.6    
94.9    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 22821, rend_intergenic: 15867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25438, rend_intergenic: 22853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35425, rend_intergenic: 32669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37144, rend_intergenic: 35888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44623, rend_intergenic: 37313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68067, rend_intergenic: 44648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78011, rend_intergenic: 71286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85226, rend_intergenic: 79800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92653, rend_intergenic: 86501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94046, rend_intergenic: 92703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99686, rend_intergenic: 98634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103434, rend_intergenic: 100713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108785, rend_intergenic: 104821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113942, rend_intergenic: 112226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144128, rend_intergenic: 114200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148476, rend_intergenic: 146021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155779, rend_intergenic: 150327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support