-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_658647-1073250

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g7452.t1
Valid prediction for Augustus_model.g7454.t1
Valid prediction for snap_scaffold_5-snap.194-T1
Valid prediction for snap_scaffold_5-snap.189-T1
Valid prediction for snap_scaffold_5-snap.142-T1
Valid prediction for snap_scaffold_5-snap.191-T1
Valid prediction for snap_scaffold_5-snap.177-T1
Valid prediction for snap_scaffold_5-snap.186-T1
Valid prediction for CodingQuarry_transcript_51965-T1
Couldn't classify 384777, 384819
Couldn't classify 390425, 390468
Sorry, prediction pasa_asmbl_45113.p1 fails validation.
(GCC)	 AT	384777-384819	GT	AGG
(AGC)	 AG	384957-385085	GT	CGG
(GAG)	 AG	386829-386996	GT	AGG
(CCC)	 AG	387079-387198	GT	AGG
(GTC)	 AG	387597-387761	GT	GGG
(GTG)	 AG	389948-390106	GT	GAG
(GGA)	 AG	390425-390468	CC	GCC
-recovered pasa_asmbl_45113.p1, terminal, 386829, 386996
-recovered pasa_asmbl_45113.p1, internal, 384957, 385085
-recovered pasa_asmbl_45113.p1, internal, 386829, 386996
-recovered pasa_asmbl_45113.p1, internal, 387079, 387198
-recovered pasa_asmbl_45113.p1, internal, 387597, 387761
-recovered pasa_asmbl_45113.p1, internal, 389948, 390106
Valid prediction for GlimmerHMM_glimmerT_11384-T1
Valid prediction for snap_scaffold_5-snap.150-T1
Valid prediction for GlimmerHMM_glimmerT_11395-T1
Valid prediction for snap_scaffold_5-snap.160-T1
Valid prediction for GlimmerHMM_glimmerT_11415-T1
Valid prediction for snap_scaffold_5-snap.139-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_11403-T1
Valid prediction for Augustus_model.g7465.t1
Valid prediction for snap_scaffold_5-snap.155-T1
Couldn't classify 147970, 148222
Couldn't classify 152367, 152513
Sorry, prediction pasa_asmbl_46345.p1 fails validation.
(GAT)	 CA	147970-148222	GT	TGG
(GTC)	 AG	148626-148723	GT	AGG
(GTG)	 AG	149581-149728	GT	TGG
(GTG)	 AG	151179-151297	GT	AGG
(GCT)	 AG	151919-151996	GT	AGG
(GTG)	 AG	152367-152513	GA	TTG
-recovered pasa_asmbl_46345.p1, internal, 148626, 148723
-recovered pasa_asmbl_46345.p1, internal, 149581, 149728
-recovered pasa_asmbl_46345.p1, internal, 151179, 151297
-recovered pasa_asmbl_46345.p1, internal, 151919, 151996
Valid prediction for Augustus_model.g7444.t1
Valid prediction for Augustus_model.g7439.t1
Valid prediction for snap_scaffold_5-snap.182-T1
Valid prediction for Augustus_model.g7468.t1
Valid prediction for Augustus_model.g7447.t1
Valid prediction for snap_scaffold_5-snap.143-T1
Valid prediction for GlimmerHMM_glimmerT_11387-T1
Valid prediction for snap_scaffold_5-snap.178-T1
Valid prediction for GlimmerHMM_glimmerT_11398-T1
Valid prediction for GlimmerHMM_glimmerT_11406-T1
Valid prediction for Augustus_model.g7448.t1
Valid prediction for snap_scaffold_5-snap.158-T1
Valid prediction for snap_scaffold_5-snap.145-T1
Valid prediction for snap_scaffold_5-snap.196-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.179-T1
Couldn't classify 336409, 336526
Sorry, prediction pasa_asmbl_45108.p1 fails validation.
(ATG)	 CG	332391-332531	GT	AGG
(CTG)	 AG	333634-333779	GT	AGG
(CAC)	 AG	335151-335226	GT	AGG
(AGG)	 AG	335651-335790	GT	AGG
(ACA)	 AG	336409-336526	TG	GGT
-recovered pasa_asmbl_45108.p1, initial, 332391, 332531
-recovered pasa_asmbl_45108.p1, internal, 333634, 333779
-recovered pasa_asmbl_45108.p1, internal, 335151, 335226
-recovered pasa_asmbl_45108.p1, internal, 335651, 335790
Valid prediction for snap_scaffold_5-snap.212-T1
Couldn't classify 396543, 396650
Couldn't classify 398469, 398587
Sorry, prediction pasa_asmbl_46393.p1 fails validation.
(GTG)	 GT	396543-396650	GT	TGG
(GTG)	 AG	396978-397107	GT	TGG
(CCA)	 AG	397809-397925	GT	AGG
(ACA)	 AG	398469-398587	GT	GCG
-recovered pasa_asmbl_46393.p1, internal, 396978, 397107
-recovered pasa_asmbl_46393.p1, internal, 397809, 397925
-recovered pasa_asmbl_46393.p1, internal, 398469, 398587
Valid prediction for snap_scaffold_5-snap.209-T1
Valid prediction for snap_scaffold_5-snap.164-T1
Valid prediction for snap_scaffold_5-snap.200-T1
Valid prediction for GlimmerHMM_glimmerT_11380-T1
Valid prediction for GlimmerHMM_glimmerT_11388-T1
Valid prediction for snap_scaffold_5-snap.149-T1
Couldn't classify 214246, 214385
Sorry, prediction pasa_asmbl_46410.p1 fails validation.
(ATG)	 AG	213330-213396	GT	AGG
(GCT)	 AG	213717-213935	GT	TGG
(GCT)	 AG	214246-214385	CT	GGC
-recovered pasa_asmbl_46410.p1, initial, 213330, 213396
-recovered pasa_asmbl_46410.p1, internal, 213330, 213396
-recovered pasa_asmbl_46410.p1, internal, 213717, 213935
Valid prediction for snap_scaffold_5-snap.147-T1
Valid prediction for snap_scaffold_5-snap.169-T1
Valid prediction for snap_scaffold_5-snap.137-T1
Valid prediction for snap_scaffold_5-snap.136-T1
Valid prediction for snap_scaffold_5-snap.141-T1
Valid prediction for snap_scaffold_5-snap.175-T1
Valid prediction for GlimmerHMM_glimmerT_11402-T1
Couldn't classify 171477, 171590
Couldn't classify 174155, 174354
Sorry, prediction pasa_asmbl_45104.p1 fails validation.
(ACT)	 GG	171477-171590	GT	CAG
(GAG)	 AG	172647-172779	GT	AGG
(ATA)	 AG	173069-173245	GT	AGG
(GCT)	 AG	173680-173898	GT	TGG
(GCT)	 AG	174155-174354	GT	GTG
-recovered pasa_asmbl_45104.p1, internal, 172647, 172779
-recovered pasa_asmbl_45104.p1, internal, 173069, 173245
-recovered pasa_asmbl_45104.p1, internal, 173680, 173898
-recovered pasa_asmbl_45104.p1, internal, 174155, 174354
Valid prediction for snap_scaffold_5-snap.176-T1
Valid prediction for snap_scaffold_5-snap.187-T1
Valid prediction for snap_scaffold_5-snap.185-T1
Valid prediction for snap_scaffold_5-snap.172-T1
Valid prediction for Augustus_model.g7449.t1
Valid prediction for Augustus_model.g7440.t1
Valid prediction for GlimmerHMM_glimmerT_11404-T1
Valid prediction for GlimmerHMM_glimmerT_11392-T1
Valid prediction for GlimmerHMM_glimmerT_11416-T1
Valid prediction for GlimmerHMM_glimmerT_11408-T1
Valid prediction for snap_scaffold_5-snap.198-T1
Valid prediction for GlimmerHMM_glimmerT_11386-T1
Valid prediction for GlimmerHMM_glimmerT_11421-T1
Valid prediction for GlimmerHMM_glimmerT_11390-T1
Valid prediction for GlimmerHMM_glimmerT_11379-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.204-T1
Valid prediction for snap_scaffold_5-snap.170-T1
Valid prediction for Augustus_model.g7457.t1
Valid prediction for snap_scaffold_5-snap.202-T1
Valid prediction for snap_scaffold_5-snap.207-T1
Valid prediction for GlimmerHMM_glimmerT_11400-T1
Couldn't classify 111846, 111960
Couldn't classify 112798, 112956
Sorry, prediction pasa_asmbl_46366.p1 fails validation.
(AGG)	 AT	111846-111960	GT	AGG
(AGC)	 AG	112581-112693	GT	AGG
(ATG)	 AG	112798-112956	TA	GGT
-recovered pasa_asmbl_46366.p1, internal, 112581, 112693
Valid prediction for snap_scaffold_5-snap.146-T1
Valid prediction for GlimmerHMM_glimmerT_11394-T1
Valid prediction for GlimmerHMM_glimmerT_11401-T1
Couldn't classify 337410, 337607
Sorry, prediction pasa_asmbl_45112.p1 fails validation.
(CAG)	 TG	337410-337607	GT	CGG
(GGT)	 AG	338532-338613	GT	AGG
(GCA)	 AG	339141-339330	GT	AGG
(GCA)	 AG	339535-339658	GC	GAG
-recovered pasa_asmbl_45112.p1, terminal, 339535, 339658
-recovered pasa_asmbl_45112.p1, internal, 338532, 338613
-recovered pasa_asmbl_45112.p1, internal, 339141, 339330
-recovered pasa_asmbl_45112.p1, internal, 339535, 339658
Couldn't classify 171185, 171324
Sorry, prediction pasa_asmbl_45102.p1 fails validation.
(ATG)	 CC	156377-156490	GT	AGG
(GTG)	 AG	156596-156709	GT	AGG
(GAT)	 AG	156897-157040	GT	GAG
(ATG)	 AG	157480-157603	GT	AGG
(GTG)	 AG	157703-157863	GT	AGG
(ACC)	 AG	158052-158142	GT	AGG
(GCG)	 AG	158409-158578	GT	AGG
(GGC)	 AG	158733-158850	GT	GAG
(AGA)	 AG	159141-159253	GT	AGG
(GTG)	 AG	159518-159667	GT	AGG
(GTG)	 AG	159930-160248	GT	AGG
(GCG)	 AG	160562-160735	GT	GGG
(GAC)	 AG	161501-161663	GT	CGG
(AGG)	 AG	161775-161935	GT	AGG
(GGA)	 AG	162173-162340	GT	AGG
(GCG)	 AG	162429-162552	GT	AGG
(TCC)	 AG	162833-162989	GT	CTG
(GAC)	 AG	163136-163325	GT	AGG
(GGG)	 AG	164723-164970	GT	CGG
(GCG)	 AG	166633-166732	GT	AGG
(GCG)	 AG	167342-167482	GT	AGG
(GCA)	 AG	167587-167715	GT	GGG
(GAG)	 AG	167824-167997	GT	AGG
(GTG)	 AG	168635-168796	GT	TGG
(GTG)	 AG	168995-169198	GT	AGG
(GTT)	 AG	169377-169529	GT	AGG
(GAA)	 AG	169713-169835	GT	AGG
(AGA)	 AG	170048-170314	GT	AGG
(CTG)	 AG	171185-171324	GA	GTG
-recovered pasa_asmbl_45102.p1, initial, 156377, 156490
-recovered pasa_asmbl_45102.p1, initial, 157480, 157603
-recovered pasa_asmbl_45102.p1, internal, 156596, 156709
-recovered pasa_asmbl_45102.p1, internal, 156897, 157040
-recovered pasa_asmbl_45102.p1, internal, 157480, 157603
-recovered pasa_asmbl_45102.p1, internal, 157703, 157863
-recovered pasa_asmbl_45102.p1, internal, 158052, 158142
-recovered pasa_asmbl_45102.p1, internal, 158409, 158578
-recovered pasa_asmbl_45102.p1, internal, 158733, 158850
-recovered pasa_asmbl_45102.p1, internal, 159141, 159253
-recovered pasa_asmbl_45102.p1, internal, 159518, 159667
-recovered pasa_asmbl_45102.p1, internal, 159930, 160248
-recovered pasa_asmbl_45102.p1, internal, 160562, 160735
-recovered pasa_asmbl_45102.p1, internal, 161501, 161663
-recovered pasa_asmbl_45102.p1, internal, 161775, 161935
-recovered pasa_asmbl_45102.p1, internal, 162173, 162340
-recovered pasa_asmbl_45102.p1, internal, 162429, 162552
-recovered pasa_asmbl_45102.p1, internal, 162833, 162989
-recovered pasa_asmbl_45102.p1, internal, 163136, 163325
-recovered pasa_asmbl_45102.p1, internal, 164723, 164970
-recovered pasa_asmbl_45102.p1, internal, 166633, 166732
-recovered pasa_asmbl_45102.p1, internal, 167342, 167482
-recovered pasa_asmbl_45102.p1, internal, 167587, 167715
-recovered pasa_asmbl_45102.p1, internal, 167824, 167997
-recovered pasa_asmbl_45102.p1, internal, 168635, 168796
-recovered pasa_asmbl_45102.p1, internal, 168995, 169198
-recovered pasa_asmbl_45102.p1, internal, 169377, 169529
-recovered pasa_asmbl_45102.p1, internal, 169713, 169835
-recovered pasa_asmbl_45102.p1, internal, 170048, 170314
Valid prediction for snap_scaffold_5-snap.161-T1
Valid prediction for Augustus_model.g7445.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_11420-T1
Valid prediction for pasa_asmbl_43783.p1
Couldn't classify 146693, 147088
Sorry, prediction pasa_asmbl_43789.p1 fails validation.
(CCC)	 TC	146693-147088	GG	GGG
Valid prediction for GlimmerHMM_glimmerT_11393-T1
Valid prediction for snap_scaffold_5-snap.201-T1
Valid prediction for snap_scaffold_5-snap.148-T1
Valid prediction for snap_scaffold_5-snap.190-T1
Valid prediction for pasa_asmbl_43788.p1
Valid prediction for pasa_asmbl_43810.p1
Valid prediction for snap_scaffold_5-snap.166-T1
Couldn't classify 215078, 215143
Couldn't classify 217218, 217279
Sorry, prediction pasa_asmbl_43786.p1 fails validation.
(GAG)	 TC	215078-215143	GT	AGG
(GCG)	 AG	215411-215526	GT	ACG
(CAT)	 AG	216015-216082	GT	AGG
(AGC)	 AG	217218-217279	GT	AGG
-recovered pasa_asmbl_43786.p1, internal, 215411, 215526
-recovered pasa_asmbl_43786.p1, internal, 216015, 216082
-recovered pasa_asmbl_43786.p1, internal, 217218, 217279
Valid prediction for GlimmerHMM_glimmerT_11419-T1
Valid prediction for GlimmerHMM_glimmerT_11405-T1
Valid prediction for snap_scaffold_5-snap.157-T1
Couldn't classify 219761, 219883
Sorry, prediction pasa_asmbl_45039.p2 fails validation.
(TCT)	 TG	219761-219883	GT	CGG
(GAG)	 AG	220409-220520	GT	CTG
(CGG)	 AG	220713-220789	GG	GAG
-recovered pasa_asmbl_45039.p2, terminal, 220713, 220789
-recovered pasa_asmbl_45039.p2, internal, 220409, 220520
Valid prediction for snap_scaffold_5-snap.165-T1
Valid prediction for GlimmerHMM_glimmerT_11385-T1
Valid prediction for CodingQuarry_transcript_51977-T1
Valid prediction for GlimmerHMM_glimmerT_11411-T1
Valid prediction for snap_scaffold_5-snap.195-T1
Valid prediction for GlimmerHMM_glimmerT_11381-T1
Valid prediction for HiQ_model.g7462.t1
Valid prediction for GlimmerHMM_glimmerT_11389-T1
Valid prediction for snap_scaffold_5-snap.180-T1
Valid prediction for pasa_asmbl_43798.p2
Valid prediction for GlimmerHMM_glimmerT_11391-T1
Valid prediction for snap_scaffold_5-snap.140-T1
Valid prediction for Augustus_model.g7463.t1
Valid prediction for pasa_asmbl_43804.p1
Valid prediction for snap_scaffold_5-snap.208-T1
Valid prediction for snap_scaffold_5-snap.197-T1
Valid prediction for Augustus_model.g7459.t1
Valid prediction for snap_scaffold_5-snap.184-T1
Valid prediction for snap_scaffold_5-snap.181-T1
Valid prediction for snap_scaffold_5-snap.188-T1
Valid prediction for Augustus_model.g7442.t1
Valid prediction for snap_scaffold_5-snap.205-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.156-T1
Valid prediction for Augustus_model.g7469.t1
Valid prediction for GlimmerHMM_glimmerT_11414-T1
Valid prediction for Augustus_model.g7451.t1
Valid prediction for Augustus_model.g7450.t1
Valid prediction for Augustus_model.g7441.t1
Valid prediction for Augustus_model.g7460.t1
Valid prediction for Augustus_model.g7461.t1
Valid prediction for HiQ_model.g7455.t1
Valid prediction for Augustus_model.g7443.t1
Valid prediction for GlimmerHMM_glimmerT_11407-T1
Valid prediction for pasa_asmbl_43792.p1
Valid prediction for HiQ_model.g7446.t1
Valid prediction for Augustus_model.g7466.t1
Valid prediction for CodingQuarry_transcript_51970-T1
Valid prediction for GlimmerHMM_glimmerT_11422-T1
Valid prediction for GlimmerHMM_glimmerT_11399-T1
Valid prediction for CodingQuarry_transcript_51972-T1
Valid prediction for CodingQuarry_transcript_51973-T1
Valid prediction for snap_scaffold_5-snap.174-T1
Valid prediction for snap_scaffold_5-snap.173-T1
Valid prediction for CodingQuarry_transcript_51975-T1
Valid prediction for snap_scaffold_5-snap.159-T1
Valid prediction for GlimmerHMM_glimmerT_11417-T1
Valid prediction for snap_scaffold_5-snap.211-T1
Valid prediction for snap_scaffold_5-snap.153-T1
Couldn't classify 8415, 8513
Sorry, prediction pasa_asmbl_43813.p1 fails validation.
(CTC)	 GC	8415-8513	GT	ATG
(CAG)	 AG	9038-9196	GT	ACG
(GGT)	 AG	9557-9732	GT	AGG
(GCC)	 AG	10308-10479	GT	AGG
(GAC)	 AG	10884-10975	GT	AGG
(GAT)	 AG	11117-11171	TG	GAT
-recovered pasa_asmbl_43813.p1, terminal, 11117, 11171
-recovered pasa_asmbl_43813.p1, internal, 9038, 9196
-recovered pasa_asmbl_43813.p1, internal, 9557, 9732
-recovered pasa_asmbl_43813.p1, internal, 10308, 10479
-recovered pasa_asmbl_43813.p1, internal, 10884, 10975
Valid prediction for snap_scaffold_5-snap.152-T1
Valid prediction for Augustus_model.g7467.t1
Valid prediction for GlimmerHMM_glimmerT_11410-T1
Valid prediction for snap_scaffold_5-snap.210-T1
Valid prediction for snap_scaffold_5-snap.162-T1
Valid prediction for Augustus_model.g7456.t1
Valid prediction for snap_scaffold_5-snap.199-T1
Valid prediction for CodingQuarry_transcript_51963-T1
Valid prediction for snap_scaffold_5-snap.193-T1
Valid prediction for Augustus_model.g7453.t1
Couldn't classify 134487, 134559
Couldn't classify 140225, 140295
Sorry, prediction pasa_asmbl_43790.p1 fails validation.
(CGG)	 TA	134487-134559	GT	CGG
(TCA)	 AG	134814-134928	GT	CGG
(GTT)	 AG	135034-135258	GT	AGG
(GCT)	 AG	136082-136212	GT	AGG
(ATG)	 AG	136349-136496	GT	AGG
(GCT)	 AG	137588-137873	GT	AGG
(CTC)	 AG	138614-138712	GT	AGG
(GTT)	 AG	139357-139468	GT	AGG
(GTC)	 AG	140225-140295	CA	AAC
add_exon() Sorry, pasa_asmbl_43790.p1 136349-136496-initial-1 is invalid.
-recovered pasa_asmbl_43790.p1, initial, 136349, 136496
add_exon() Sorry, pasa_asmbl_43790.p1 136082-136212-terminal-2 is invalid.
-recovered pasa_asmbl_43790.p1, terminal, 136082, 136212
add_exon() Sorry, pasa_asmbl_43790.p1 139357-139468-terminal-3 is invalid.
-recovered pasa_asmbl_43790.p1, terminal, 139357, 139468
-recovered pasa_asmbl_43790.p1, internal, 134814, 134928
-recovered pasa_asmbl_43790.p1, internal, 135034, 135258
-recovered pasa_asmbl_43790.p1, internal, 136082, 136212
-recovered pasa_asmbl_43790.p1, internal, 136349, 136496
-recovered pasa_asmbl_43790.p1, internal, 137588, 137873
-recovered pasa_asmbl_43790.p1, internal, 138614, 138712
-recovered pasa_asmbl_43790.p1, internal, 139357, 139468
Valid prediction for snap_scaffold_5-snap.168-T1
Valid prediction for snap_scaffold_5-snap.144-T1
Valid prediction for GlimmerHMM_glimmerT_11418-T1
Valid prediction for snap_scaffold_5-snap.154-T1
Valid prediction for snap_scaffold_5-snap.167-T1
Valid prediction for CodingQuarry_transcript_51968-T1
Valid prediction for snap_scaffold_5-snap.183-T1
Valid prediction for snap_scaffold_5-snap.138-T1
Valid prediction for GlimmerHMM_glimmerT_11397-T1
Valid prediction for snap_scaffold_5-snap.163-T1
Valid prediction for Augustus_model.g7464.t1
Valid prediction for snap_scaffold_5-snap.206-T1
Valid prediction for snap_scaffold_5-snap.192-T1
Valid prediction for GlimmerHMM_glimmerT_11412-T1
Valid prediction for CodingQuarry_transcript_51974-T1
Valid prediction for GlimmerHMM_glimmerT_11382-T1
Valid prediction for Augustus_model.g7458.t1
Valid prediction for GlimmerHMM_glimmerT_11396-T1
Valid prediction for snap_scaffold_5-snap.151-T1
Valid prediction for GlimmerHMM_glimmerT_11383-T1
Valid prediction for snap_scaffold_5-snap.171-T1
Valid prediction for CodingQuarry_transcript_51976-T1
Valid prediction for CodingQuarry_transcript_51967-T1
Valid prediction for snap_scaffold_5-snap.203-T1
Valid prediction for GlimmerHMM_glimmerT_11423-T1
Valid prediction for GlimmerHMM_glimmerT_11409-T1
Valid prediction for GlimmerHMM_glimmerT_11413-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19214, rend_intergenic: 17779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22235, rend_intergenic: 19403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22805, rend_intergenic: 22279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25930, rend_intergenic: 22849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52644, rend_intergenic: 30196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80267, rend_intergenic: 53327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89903, rend_intergenic: 83346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117904, rend_intergenic: 95592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128607, rend_intergenic: 120183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134589, rend_intergenic: 129516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135052, rend_intergenic: 134798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138215, rend_intergenic: 135197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145942, rend_intergenic: 138784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148736, rend_intergenic: 147354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175381, rend_intergenic: 149139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199097, rend_intergenic: 193816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214920, rend_intergenic: 201342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242826, rend_intergenic: 226349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252342, rend_intergenic: 249340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254515, rend_intergenic: 252525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265488, rend_intergenic: 256484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 270791, rend_intergenic: 267250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279789, rend_intergenic: 270892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284355, rend_intergenic: 280396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 295077, rend_intergenic: 287948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 310818, rend_intergenic: 310654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 316727, rend_intergenic: 310818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 324517, rend_intergenic: 316776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 329512, rend_intergenic: 324763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 339658, rend_intergenic: 336470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 346969, rend_intergenic: 340272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 348655, rend_intergenic: 347213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 371058, rend_intergenic: 359081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 374771, rend_intergenic: 371131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 381331, rend_intergenic: 375142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 386303, rend_intergenic: 384762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 398726, rend_intergenic: 386605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 410611, rend_intergenic: 402811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 414604
-exon list size: 834


building trellis

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-found 48 predictions from path traversal
Error with prediction: snap lend_intergenic: 19214, rend_intergenic: 17779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22235, rend_intergenic: 19403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22805, rend_intergenic: 22279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25930, rend_intergenic: 22849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52644, rend_intergenic: 30196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80267, rend_intergenic: 53327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89903, rend_intergenic: 83346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117904, rend_intergenic: 95592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128607, rend_intergenic: 120183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134589, rend_intergenic: 129516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135052, rend_intergenic: 134798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138215, rend_intergenic: 135197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145942, rend_intergenic: 138784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148736, rend_intergenic: 147354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175381, rend_intergenic: 149139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199097, rend_intergenic: 193816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214920, rend_intergenic: 201342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242826, rend_intergenic: 226349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252342, rend_intergenic: 249340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254515, rend_intergenic: 252525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265488, rend_intergenic: 256484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 270791, rend_intergenic: 267250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 279789, rend_intergenic: 270892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 284355, rend_intergenic: 280396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 295077, rend_intergenic: 287948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 310818, rend_intergenic: 310654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 316727, rend_intergenic: 310818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 324517, rend_intergenic: 316776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 329512, rend_intergenic: 324763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 339658, rend_intergenic: 336470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 346969, rend_intergenic: 340272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 348655, rend_intergenic: 347213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 371058, rend_intergenic: 359081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 374771, rend_intergenic: 371131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 381331, rend_intergenic: 375142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 386303, rend_intergenic: 384762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 398726, rend_intergenic: 386605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 410611, rend_intergenic: 402811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 39 predictions persist after filtering for low support