-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_575797-660985

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_5-snap.131-T1
Valid prediction for GlimmerHMM_glimmerT_11375-T1
Valid prediction for Augustus_model.g7437.t1
Valid prediction for GlimmerHMM_glimmerT_11371-T1
Valid prediction for GlimmerHMM_glimmerT_11374-T1
Valid prediction for snap_scaffold_5-snap.133-T1
Valid prediction for snap_scaffold_5-snap.129-T1
Valid prediction for snap_scaffold_5-snap.123-T1
Valid prediction for GlimmerHMM_glimmerT_11376-T1
Valid prediction for GlimmerHMM_glimmerT_11377-T1
Valid prediction for snap_scaffold_5-snap.126-T1
Valid prediction for snap_scaffold_5-snap.125-T1
Valid prediction for Augustus_model.g7436.t1
Valid prediction for GlimmerHMM_glimmerT_11373-T1
Valid prediction for snap_scaffold_5-snap.127-T1
Valid prediction for Augustus_model.g7435.t1
Valid prediction for snap_scaffold_5-snap.120-T1
Valid prediction for snap_scaffold_5-snap.135-T1
Valid prediction for GlimmerHMM_glimmerT_11378-T1
Valid prediction for snap_scaffold_5-snap.119-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.122-T1
Valid prediction for snap_scaffold_5-snap.128-T1
Valid prediction for snap_scaffold_5-snap.124-T1
Valid prediction for snap_scaffold_5-snap.130-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.134-T1
Valid prediction for Augustus_model.g7438.t1
Valid prediction for GlimmerHMM_glimmerT_11370-T1
Valid prediction for snap_scaffold_5-snap.132-T1
Valid prediction for snap_scaffold_5-snap.118-T1
Valid prediction for snap_scaffold_5-snap.121-T1
Valid prediction for GlimmerHMM_glimmerT_11372-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7837, rend_intergenic: 2136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13638, rend_intergenic: 10639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27822, rend_intergenic: 19330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35588, rend_intergenic: 27884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44782, rend_intergenic: 42329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45700, rend_intergenic: 45342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66719, rend_intergenic: 48252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71017, rend_intergenic: 66841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71946, rend_intergenic: 71021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75719, rend_intergenic: 73234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78036, rend_intergenic: 76435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83196, rend_intergenic: 79006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 85189
-exon list size: 128


building trellis

0.8    
1.5    
2.3    
3.1    
3.8    
4.6    
5.4    
6.2    
6.9    
7.7    
8.5    
9.2    
10.0    
10.8    
11.5    
12.3    
13.1    
13.8    
14.6    
15.4    
16.2    
16.9    
17.7    
18.5    
19.2    
20.0    
20.8    
21.5    
22.3    
23.1    
23.8    
24.6    
25.4    
26.2    
26.9    
27.7    
28.5    
29.2    
30.0    
30.8    
31.5    
32.3    
33.1    
33.8    
34.6    
35.4    
36.2    
36.9    
37.7    
38.5    
39.2    
40.0    
40.8    
41.5    
42.3    
43.1    
43.8    
44.6    
45.4    
46.2    
46.9    
47.7    
48.5    
49.2    
50.0    
50.8    
51.5    
52.3    
53.1    
53.8    
54.6    
55.4    
56.2    
56.9    
57.7    
58.5    
59.2    
60.0    
60.8    
61.5    
62.3    
63.1    
63.8    
64.6    
65.4    
66.2    
66.9    
67.7    
68.5    
69.2    
70.0    
70.8    
71.5    
72.3    
73.1    
73.8    
74.6    
75.4    
76.2    
76.9    
77.7    
78.5    
79.2    
80.0    
80.8    
81.5    
82.3    
83.1    
83.8    
84.6    
85.4    
86.2    
86.9    
87.7    
88.5    
89.2    
90.0    
90.8    
91.5    
92.3    
93.1    
93.8    
94.6    
95.4    
96.2    
96.9    
97.7    
98.5    
99.2    
-found 11 predictions from path traversal
Error with prediction: snap lend_intergenic: 7837, rend_intergenic: 2136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13638, rend_intergenic: 10639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27822, rend_intergenic: 19330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35588, rend_intergenic: 27884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44782, rend_intergenic: 42329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45700, rend_intergenic: 45342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66719, rend_intergenic: 48252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71017, rend_intergenic: 66841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71946, rend_intergenic: 71021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75719, rend_intergenic: 73234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78036, rend_intergenic: 76435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83196, rend_intergenic: 79006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support