-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_5105449-5328545

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g7801.t1
Valid prediction for snap_scaffold_5-snap.1012-T1
Valid prediction for snap_scaffold_5-snap.1013-T1
Valid prediction for GlimmerHMM_glimmerT_11908-T1
Valid prediction for Augustus_model.g7796.t1
Valid prediction for snap_scaffold_5-snap.1008-T1
Valid prediction for Augustus_model.g7794.t1
Valid prediction for GlimmerHMM_glimmerT_11921-T1
Valid prediction for GlimmerHMM_glimmerT_11912-T1
Valid prediction for snap_scaffold_5-snap.1035-T1
Valid prediction for GlimmerHMM_glimmerT_11902-T1
Valid prediction for Augustus_model.g7800.t1
Valid prediction for GlimmerHMM_glimmerT_11892-T1
Valid prediction for snap_scaffold_5-snap.1015-T1
Valid prediction for snap_scaffold_5-snap.1028-T1
Valid prediction for snap_scaffold_5-snap.1043-T1
Valid prediction for GlimmerHMM_glimmerT_11914-T1
Valid prediction for GlimmerHMM_glimmerT_11917-T1
Valid prediction for snap_scaffold_5-snap.1014-T1
Valid prediction for snap_scaffold_5-snap.1018-T1
Valid prediction for snap_scaffold_5-snap.1023-T1
Valid prediction for GlimmerHMM_glimmerT_11916-T1
Valid prediction for GlimmerHMM_glimmerT_11898-T1
Valid prediction for Augustus_model.g7793.t1
Valid prediction for snap_scaffold_5-snap.1019-T1
Valid prediction for snap_scaffold_5-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_11920-T1
Valid prediction for snap_scaffold_5-snap.1042-T1
Valid prediction for snap_scaffold_5-snap.1040-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.1027-T1
Valid prediction for snap_scaffold_5-snap.1025-T1
Valid prediction for GlimmerHMM_glimmerT_11900-T1
Valid prediction for Augustus_model.g7798.t1
Valid prediction for GlimmerHMM_glimmerT_11896-T1
Valid prediction for snap_scaffold_5-snap.1010-T1
Valid prediction for Augustus_model.g7792.t1
Valid prediction for GlimmerHMM_glimmerT_11910-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_44033.p1
Valid prediction for snap_scaffold_5-snap.1038-T1
Valid prediction for GlimmerHMM_glimmerT_11904-T1
Valid prediction for snap_scaffold_5-snap.1034-T1
Valid prediction for GlimmerHMM_glimmerT_11906-T1
Valid prediction for GlimmerHMM_glimmerT_11894-T1
Valid prediction for snap_scaffold_5-snap.1039-T1
Valid prediction for snap_scaffold_5-snap.1037-T1
Valid prediction for GlimmerHMM_glimmerT_11911-T1
Valid prediction for CodingQuarry_transcript_52055-T1
Valid prediction for snap_scaffold_5-snap.1016-T1
Valid prediction for snap_scaffold_5-snap.1030-T1
Valid prediction for GlimmerHMM_glimmerT_11897-T1
Valid prediction for GlimmerHMM_glimmerT_11905-T1
Valid prediction for snap_scaffold_5-snap.1026-T1
Valid prediction for GlimmerHMM_glimmerT_11899-T1
Valid prediction for Augustus_model.g7786.t1
Valid prediction for Augustus_model.g7785.t1
Valid prediction for snap_scaffold_5-snap.1029-T1
Valid prediction for GlimmerHMM_glimmerT_11923-T1
Valid prediction for snap_scaffold_5-snap.1033-T1
Valid prediction for Augustus_model.g7789.t1
Valid prediction for GlimmerHMM_glimmerT_11901-T1
Valid prediction for snap_scaffold_5-snap.1041-T1
Valid prediction for Augustus_model.g7799.t1
Valid prediction for Augustus_model.g7784.t1
Valid prediction for Augustus_model.g7788.t1
Valid prediction for GlimmerHMM_glimmerT_11919-T1
Valid prediction for snap_scaffold_5-snap.1024-T1
Valid prediction for snap_scaffold_5-snap.1031-T1
Valid prediction for snap_scaffold_5-snap.1020-T1
Valid prediction for Augustus_model.g7797.t1
Valid prediction for Augustus_model.g7795.t1
Valid prediction for snap_scaffold_5-snap.1017-T1
Valid prediction for GlimmerHMM_glimmerT_11895-T1
Valid prediction for snap_scaffold_5-snap.1022-T1
Valid prediction for GlimmerHMM_glimmerT_11893-T1
Valid prediction for snap_scaffold_5-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_11918-T1
Valid prediction for GlimmerHMM_glimmerT_11907-T1
Valid prediction for GlimmerHMM_glimmerT_11922-T1
Valid prediction for snap_scaffold_5-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_11909-T1
Valid prediction for HiQ_model.g7790.t1
Valid prediction for snap_scaffold_5-snap.1044-T1
Valid prediction for snap_scaffold_5-snap.1021-T1
Valid prediction for Augustus_model.g7787.t1
Valid prediction for snap_scaffold_5-snap.1032-T1
Valid prediction for GlimmerHMM_glimmerT_11915-T1
Valid prediction for GlimmerHMM_glimmerT_11903-T1
Valid prediction for Augustus_model.g7791.t1
Valid prediction for snap_scaffold_5-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_11924-T1
Valid prediction for GlimmerHMM_glimmerT_11913-T1
Valid prediction for snap_scaffold_5-snap.1009-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8271, rend_intergenic: 2157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10965, rend_intergenic: 8500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15463, rend_intergenic: 12336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49250, rend_intergenic: 27910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58733, rend_intergenic: 51814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93029, rend_intergenic: 80605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97456, rend_intergenic: 94237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102108, rend_intergenic: 100586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103898, rend_intergenic: 102247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115624, rend_intergenic: 104201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128041, rend_intergenic: 118201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144926, rend_intergenic: 140157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195727, rend_intergenic: 145910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208069, rend_intergenic: 197975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221214, rend_intergenic: 217702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 100302, rend_intergenic: 100299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 223097
-exon list size: 379


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.4    
2.6    
2.9    
3.1    
3.4    
3.7    
3.9    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.8    
6.0    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.9    
8.1    
8.4    
8.7    
8.9    
9.2    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.0    
11.3    
11.5    
11.8    
12.1    
12.3    
12.6    
12.9    
13.1    
13.4    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.2    
15.5    
15.7    
16.0    
16.3    
16.5    
16.8    
17.1    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.5    
21.8    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.6    
23.9    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.7    
26.0    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.3    
28.6    
28.9    
29.1    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.6    
34.9    
35.2    
35.4    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.3    
37.5    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
40.9    
41.2    
41.5    
41.7    
42.0    
42.3    
42.5    
42.8    
43.0    
43.3    
43.6    
43.8    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.7    
47.0    
47.2    
47.5    
47.8    
48.0    
48.3    
48.6    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.4    
51.7    
52.0    
52.2    
52.5    
52.8    
53.0    
53.3    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.2    
56.4    
56.7    
57.0    
57.2    
57.5    
57.7    
58.0    
58.3    
58.5    
58.8    
59.1    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.2    
61.4    
61.7    
61.9    
62.2    
62.5    
62.7    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.6    
64.8    
65.1    
65.4    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.9    
71.1    
71.4    
71.7    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.2    
78.5    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
82.9    
83.2    
83.5    
83.7    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.1    
87.4    
87.7    
87.9    
88.2    
88.5    
88.7    
89.0    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.9    
92.1    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
94.0    
94.2    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.1    
96.3    
96.6    
96.9    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 8271, rend_intergenic: 2157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10965, rend_intergenic: 8500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15463, rend_intergenic: 12336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49250, rend_intergenic: 27910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58733, rend_intergenic: 51814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93029, rend_intergenic: 80605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97456, rend_intergenic: 94237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102108, rend_intergenic: 100586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103898, rend_intergenic: 102247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115624, rend_intergenic: 104201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128041, rend_intergenic: 118201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144926, rend_intergenic: 140157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195727, rend_intergenic: 145910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208069, rend_intergenic: 197975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221214, rend_intergenic: 217702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 100302, rend_intergenic: 100299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support