-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_4263770-4425385

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_11803-T1
Valid prediction for GlimmerHMM_glimmerT_11802-T1
Valid prediction for Augustus_model.g7710.t1
Valid prediction for GlimmerHMM_glimmerT_11792-T1
Valid prediction for snap_scaffold_5-snap.858-T1
Valid prediction for snap_scaffold_5-snap.850-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.842-T1
Valid prediction for GlimmerHMM_glimmerT_11798-T1
Valid prediction for Augustus_model.g7712.t1
Valid prediction for snap_scaffold_5-snap.865-T1
Valid prediction for Augustus_model.g7713.t1
Valid prediction for GlimmerHMM_glimmerT_11795-T1
Valid prediction for GlimmerHMM_glimmerT_11797-T1
Valid prediction for snap_scaffold_5-snap.832-T1
Valid prediction for GlimmerHMM_glimmerT_11786-T1
Valid prediction for GlimmerHMM_glimmerT_11783-T1
Valid prediction for GlimmerHMM_glimmerT_11796-T1
Valid prediction for snap_scaffold_5-snap.856-T1
Valid prediction for GlimmerHMM_glimmerT_11790-T1
Valid prediction for snap_scaffold_5-snap.867-T1
Valid prediction for snap_scaffold_5-snap.839-T1
Valid prediction for snap_scaffold_5-snap.849-T1
Valid prediction for snap_scaffold_5-snap.831-T1
Valid prediction for snap_scaffold_5-snap.851-T1
Valid prediction for snap_scaffold_5-snap.854-T1
Valid prediction for snap_scaffold_5-snap.845-T1
Valid prediction for GlimmerHMM_glimmerT_11793-T1
Valid prediction for Augustus_model.g7703.t1
Valid prediction for GlimmerHMM_glimmerT_11785-T1
Valid prediction for Augustus_model.g7711.t1
Valid prediction for snap_scaffold_5-snap.836-T1
Valid prediction for snap_scaffold_5-snap.862-T1
Valid prediction for snap_scaffold_5-snap.870-T1
Valid prediction for snap_scaffold_5-snap.863-T1
Valid prediction for snap_scaffold_5-snap.848-T1
Valid prediction for GlimmerHMM_glimmerT_11781-T1
Valid prediction for snap_scaffold_5-snap.837-T1
Valid prediction for GlimmerHMM_glimmerT_11799-T1
Valid prediction for snap_scaffold_5-snap.846-T1
Valid prediction for snap_scaffold_5-snap.872-T1
Valid prediction for snap_scaffold_5-snap.841-T1
Valid prediction for snap_scaffold_5-snap.859-T1
Valid prediction for snap_scaffold_5-snap.835-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.852-T1
Valid prediction for Augustus_model.g7705.t1
Valid prediction for GlimmerHMM_glimmerT_11779-T1
Valid prediction for snap_scaffold_5-snap.857-T1
Valid prediction for snap_scaffold_5-snap.871-T1
Valid prediction for snap_scaffold_5-snap.840-T1
Valid prediction for snap_scaffold_5-snap.844-T1
Valid prediction for GlimmerHMM_glimmerT_11791-T1
Valid prediction for GlimmerHMM_glimmerT_11801-T1
Valid prediction for snap_scaffold_5-snap.868-T1
Valid prediction for Augustus_model.g7702.t1
Valid prediction for snap_scaffold_5-snap.829-T1
Valid prediction for GlimmerHMM_glimmerT_11782-T1
Valid prediction for Augustus_model.g7704.t1
Valid prediction for snap_scaffold_5-snap.864-T1
Valid prediction for GlimmerHMM_glimmerT_11784-T1
Valid prediction for snap_scaffold_5-snap.843-T1
Valid prediction for snap_scaffold_5-snap.834-T1
Valid prediction for snap_scaffold_5-snap.830-T1
Valid prediction for GlimmerHMM_glimmerT_11787-T1
Valid prediction for Augustus_model.g7707.t1
Valid prediction for snap_scaffold_5-snap.838-T1
Valid prediction for snap_scaffold_5-snap.861-T1
Valid prediction for GlimmerHMM_glimmerT_11788-T1
Valid prediction for Augustus_model.g7708.t1
Valid prediction for snap_scaffold_5-snap.866-T1
Valid prediction for snap_scaffold_5-snap.853-T1
Valid prediction for snap_scaffold_5-snap.855-T1
Valid prediction for GlimmerHMM_glimmerT_11780-T1
Valid prediction for Augustus_model.g7706.t1
Valid prediction for snap_scaffold_5-snap.833-T1
Valid prediction for snap_scaffold_5-snap.869-T1
Valid prediction for GlimmerHMM_glimmerT_11789-T1
Valid prediction for GlimmerHMM_glimmerT_11794-T1
Valid prediction for snap_scaffold_5-snap.847-T1
Valid prediction for snap_scaffold_5-snap.860-T1
Valid prediction for Augustus_model.g7709.t1
Valid prediction for GlimmerHMM_glimmerT_11800-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9470, rend_intergenic: 3474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12350, rend_intergenic: 9498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19179, rend_intergenic: 12868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24773, rend_intergenic: 22303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25216, rend_intergenic: 24851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28412, rend_intergenic: 25220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31202, rend_intergenic: 28793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40863, rend_intergenic: 32944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41418, rend_intergenic: 41332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68762, rend_intergenic: 44132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75160, rend_intergenic: 70909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77826, rend_intergenic: 76583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87195, rend_intergenic: 77912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102715, rend_intergenic: 98206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123102, rend_intergenic: 105520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123325, rend_intergenic: 123126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130943, rend_intergenic: 127216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136990, rend_intergenic: 131480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145267, rend_intergenic: 142169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151684, rend_intergenic: 150307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161616
-exon list size: 301


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
5.9    
6.3    
6.6    
6.9    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.2    
9.6    
9.9    
10.2    
10.6    
10.9    
11.2    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.9    
14.2    
14.5    
14.9    
15.2    
15.5    
15.8    
16.2    
16.5    
16.8    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.5    
19.8    
20.1    
20.5    
20.8    
21.1    
21.5    
21.8    
22.1    
22.4    
22.8    
23.1    
23.4    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.1    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.7    
29.0    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.4    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.6    
38.0    
38.3    
38.6    
38.9    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.3    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.6    
43.9    
44.2    
44.6    
44.9    
45.2    
45.5    
45.9    
46.2    
46.5    
46.9    
47.2    
47.5    
47.9    
48.2    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.8    
52.1    
52.5    
52.8    
53.1    
53.5    
53.8    
54.1    
54.5    
54.8    
55.1    
55.4    
55.8    
56.1    
56.4    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.7    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.1    
61.4    
61.7    
62.0    
62.4    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.6    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
71.0    
71.3    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
73.9    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.6    
76.9    
77.2    
77.6    
77.9    
78.2    
78.5    
78.9    
79.2    
79.5    
79.9    
80.2    
80.5    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.2    
83.5    
83.8    
84.2    
84.5    
84.8    
85.1    
85.5    
85.8    
86.1    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.8    
89.1    
89.4    
89.8    
90.1    
90.4    
90.8    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.1    
93.4    
93.7    
94.1    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9470, rend_intergenic: 3474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12350, rend_intergenic: 9498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19179, rend_intergenic: 12868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24773, rend_intergenic: 22303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25216, rend_intergenic: 24851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28412, rend_intergenic: 25220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31202, rend_intergenic: 28793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40863, rend_intergenic: 32944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41418, rend_intergenic: 41332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68762, rend_intergenic: 44132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75160, rend_intergenic: 70909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77826, rend_intergenic: 76583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87195, rend_intergenic: 77912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102715, rend_intergenic: 98206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123102, rend_intergenic: 105520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123325, rend_intergenic: 123126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130943, rend_intergenic: 127216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136990, rend_intergenic: 131480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145267, rend_intergenic: 142169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151684, rend_intergenic: 150307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support