-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_2664585-2882229

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g7584.t1
Valid prediction for snap_scaffold_5-snap.547-T1
Valid prediction for snap_scaffold_5-snap.526-T1
Valid prediction for GlimmerHMM_glimmerT_11599-T1
Valid prediction for snap_scaffold_5-snap.551-T1
Valid prediction for snap_scaffold_5-snap.561-T1
Valid prediction for snap_scaffold_5-snap.558-T1
Valid prediction for snap_scaffold_5-snap.536-T1
Valid prediction for snap_scaffold_5-snap.541-T1
Valid prediction for GlimmerHMM_glimmerT_11611-T1
Valid prediction for GlimmerHMM_glimmerT_11602-T1
Valid prediction for snap_scaffold_5-snap.549-T1
Valid prediction for snap_scaffold_5-snap.529-T1
Valid prediction for snap_scaffold_5-snap.525-T1
Valid prediction for GlimmerHMM_glimmerT_11601-T1
Valid prediction for GlimmerHMM_glimmerT_11610-T1
Valid prediction for snap_scaffold_5-snap.559-T1
Valid prediction for Augustus_model.g7585.t1
Valid prediction for snap_scaffold_5-snap.532-T1
Valid prediction for snap_scaffold_5-snap.528-T1
Valid prediction for snap_scaffold_5-snap.545-T1
Valid prediction for GlimmerHMM_glimmerT_11617-T1
Valid prediction for snap_scaffold_5-snap.553-T1
Valid prediction for GlimmerHMM_glimmerT_11615-T1
Valid prediction for GlimmerHMM_glimmerT_11604-T1
Valid prediction for snap_scaffold_5-snap.539-T1
Valid prediction for snap_scaffold_5-snap.555-T1
Valid prediction for Augustus_model.g7582.t1
Valid prediction for Augustus_model.g7589.t1
Valid prediction for snap_scaffold_5-snap.533-T1
Valid prediction for snap_scaffold_5-snap.535-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_5-snap.544-T1
Valid prediction for pasa_asmbl_43896.p1
Valid prediction for snap_scaffold_5-snap.542-T1
Valid prediction for GlimmerHMM_glimmerT_11600-T1
Valid prediction for snap_scaffold_5-snap.527-T1
Valid prediction for GlimmerHMM_glimmerT_11603-T1
Valid prediction for GlimmerHMM_glimmerT_11621-T1
Valid prediction for snap_scaffold_5-snap.546-T1
Valid prediction for GlimmerHMM_glimmerT_11614-T1
Valid prediction for snap_scaffold_5-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_11608-T1
Valid prediction for snap_scaffold_5-snap.548-T1
Valid prediction for snap_scaffold_5-snap.560-T1
Valid prediction for snap_scaffold_5-snap.531-T1
Valid prediction for snap_scaffold_5-snap.543-T1
Valid prediction for snap_scaffold_5-snap.540-T1
Valid prediction for GlimmerHMM_glimmerT_11616-T1
Valid prediction for GlimmerHMM_glimmerT_11612-T1
Valid prediction for snap_scaffold_5-snap.556-T1
Valid prediction for HiQ_model.g7586.t1
Valid prediction for HiQ_model.g7583.t1
Valid prediction for snap_scaffold_5-snap.557-T1
Valid prediction for GlimmerHMM_glimmerT_11619-T1
Valid prediction for GlimmerHMM_glimmerT_11618-T1
Valid prediction for GlimmerHMM_glimmerT_11620-T1
Valid prediction for snap_scaffold_5-snap.554-T1
Valid prediction for Augustus_model.g7587.t1
Valid prediction for snap_scaffold_5-snap.550-T1
Valid prediction for snap_scaffold_5-snap.538-T1
Valid prediction for GlimmerHMM_glimmerT_11606-T1
Valid prediction for GlimmerHMM_glimmerT_11605-T1
Valid prediction for GlimmerHMM_glimmerT_11613-T1
Valid prediction for CodingQuarry_transcript_51998-T1
Valid prediction for snap_scaffold_5-snap.537-T1
Valid prediction for CodingQuarry_transcript_51997-T1
Valid prediction for GlimmerHMM_glimmerT_11607-T1
Valid prediction for snap_scaffold_5-snap.562-T1
Valid prediction for GlimmerHMM_glimmerT_11609-T1
Valid prediction for Augustus_model.g7588.t1
Valid prediction for snap_scaffold_5-snap.552-T1
Valid prediction for snap_scaffold_5-snap.534-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7434, rend_intergenic: 6064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21706, rend_intergenic: 17996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118083, rend_intergenic: 114207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132274, rend_intergenic: 131282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141596, rend_intergenic: 139595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163975, rend_intergenic: 159411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172778, rend_intergenic: 167566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176631, rend_intergenic: 175088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178697, rend_intergenic: 177117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185066, rend_intergenic: 180473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196510, rend_intergenic: 187907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203538, rend_intergenic: 197197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210316, rend_intergenic: 207765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217645
-exon list size: 228


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.0    
3.5    
3.9    
4.3    
4.8    
5.2    
5.7    
6.1    
6.5    
7.0    
7.4    
7.8    
8.3    
8.7    
9.1    
9.6    
10.0    
10.4    
10.9    
11.3    
11.7    
12.2    
12.6    
13.0    
13.5    
13.9    
14.3    
14.8    
15.2    
15.7    
16.1    
16.5    
17.0    
17.4    
17.8    
18.3    
18.7    
19.1    
19.6    
20.0    
20.4    
20.9    
21.3    
21.7    
22.2    
22.6    
23.0    
23.5    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.5    
27.0    
27.4    
27.8    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.9    
31.3    
31.7    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.7    
36.1    
36.5    
37.0    
37.4    
37.8    
38.3    
38.7    
39.1    
39.6    
40.0    
40.4    
40.9    
41.3    
41.7    
42.2    
42.6    
43.0    
43.5    
43.9    
44.3    
44.8    
45.2    
45.7    
46.1    
46.5    
47.0    
47.4    
47.8    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.2    
52.6    
53.0    
53.5    
53.9    
54.3    
54.8    
55.2    
55.7    
56.1    
56.5    
57.0    
57.4    
57.8    
58.3    
58.7    
59.1    
59.6    
60.0    
60.4    
60.9    
61.3    
61.7    
62.2    
62.6    
63.0    
63.5    
63.9    
64.3    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.3    
68.7    
69.1    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.2    
72.6    
73.0    
73.5    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.5    
77.0    
77.4    
77.8    
78.3    
78.7    
79.1    
79.6    
80.0    
80.4    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.5    
83.9    
84.3    
84.8    
85.2    
85.7    
86.1    
86.5    
87.0    
87.4    
87.8    
88.3    
88.7    
89.1    
89.6    
90.0    
90.4    
90.9    
91.3    
91.7    
92.2    
92.6    
93.0    
93.5    
93.9    
94.3    
94.8    
95.2    
95.7    
96.1    
96.5    
97.0    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 7434, rend_intergenic: 6064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21706, rend_intergenic: 17996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118083, rend_intergenic: 114207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132274, rend_intergenic: 131282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141596, rend_intergenic: 139595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163975, rend_intergenic: 159411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172778, rend_intergenic: 167566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176631, rend_intergenic: 175088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178697, rend_intergenic: 177117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185066, rend_intergenic: 180473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196510, rend_intergenic: 187907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203538, rend_intergenic: 197197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210316, rend_intergenic: 207765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support