-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_1727083-1834375

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_5-snap.347-T1
Valid prediction for snap_scaffold_5-snap.349-T1
Valid prediction for Augustus_model.g7525.t1
Valid prediction for GlimmerHMM_glimmerT_11504-T1
Valid prediction for snap_scaffold_5-snap.360-T1
Valid prediction for GlimmerHMM_glimmerT_11507-T1
Valid prediction for GlimmerHMM_glimmerT_11501-T1
Valid prediction for snap_scaffold_5-snap.358-T1
Valid prediction for GlimmerHMM_glimmerT_11508-T1
Valid prediction for snap_scaffold_5-snap.355-T1
Valid prediction for GlimmerHMM_glimmerT_11503-T1
Valid prediction for snap_scaffold_5-snap.353-T1
Valid prediction for Augustus_model.g7527.t1
Valid prediction for snap_scaffold_5-snap.357-T1
Valid prediction for snap_scaffold_5-snap.350-T1
Valid prediction for GlimmerHMM_glimmerT_11505-T1
Valid prediction for GlimmerHMM_glimmerT_11511-T1
Valid prediction for GlimmerHMM_glimmerT_11510-T1
Valid prediction for snap_scaffold_5-snap.344-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_11500-T1
Valid prediction for snap_scaffold_5-snap.351-T1
Valid prediction for snap_scaffold_5-snap.352-T1
Valid prediction for GlimmerHMM_glimmerT_11499-T1
Valid prediction for GlimmerHMM_glimmerT_11512-T1
Valid prediction for snap_scaffold_5-snap.359-T1
Valid prediction for snap_scaffold_5-snap.354-T1
Valid prediction for snap_scaffold_5-snap.356-T1
Valid prediction for snap_scaffold_5-snap.346-T1
Valid prediction for GlimmerHMM_glimmerT_11513-T1
Valid prediction for snap_scaffold_5-snap.348-T1
Valid prediction for Augustus_model.g7524.t1
Valid prediction for Augustus_model.g7526.t1
Valid prediction for snap_scaffold_5-snap.345-T1
Valid prediction for GlimmerHMM_glimmerT_11502-T1
Valid prediction for snap_scaffold_5-snap.362-T1
Valid prediction for GlimmerHMM_glimmerT_11506-T1
Valid prediction for snap_scaffold_5-snap.361-T1
Valid prediction for GlimmerHMM_glimmerT_11509-T1
Valid prediction for Augustus_model.g7523.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11257, rend_intergenic: 4920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14522, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17348, rend_intergenic: 15544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31017, rend_intergenic: 18141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41988, rend_intergenic: 31350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43322, rend_intergenic: 42146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45187, rend_intergenic: 43904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48979, rend_intergenic: 46228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61777, rend_intergenic: 55102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80755, rend_intergenic: 76611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 107293
-exon list size: 120


building trellis

0.8    
1.6    
2.5    
3.3    
4.1    
4.9    
5.7    
6.6    
7.4    
8.2    
9.0    
9.8    
10.7    
11.5    
12.3    
13.1    
13.9    
14.8    
15.6    
16.4    
17.2    
18.0    
18.9    
19.7    
20.5    
21.3    
22.1    
23.0    
23.8    
24.6    
25.4    
26.2    
27.0    
27.9    
28.7    
29.5    
30.3    
31.1    
32.0    
32.8    
33.6    
34.4    
35.2    
36.1    
36.9    
37.7    
38.5    
39.3    
40.2    
41.0    
41.8    
42.6    
43.4    
44.3    
45.1    
45.9    
46.7    
47.5    
48.4    
49.2    
50.0    
50.8    
51.6    
52.5    
53.3    
54.1    
54.9    
55.7    
56.6    
57.4    
58.2    
59.0    
59.8    
60.7    
61.5    
62.3    
63.1    
63.9    
64.8    
65.6    
66.4    
67.2    
68.0    
68.9    
69.7    
70.5    
71.3    
72.1    
73.0    
73.8    
74.6    
75.4    
76.2    
77.0    
77.9    
78.7    
79.5    
80.3    
81.1    
82.0    
82.8    
83.6    
84.4    
85.2    
86.1    
86.9    
87.7    
88.5    
89.3    
90.2    
91.0    
91.8    
92.6    
93.4    
94.3    
95.1    
95.9    
96.7    
97.5    
98.4    
99.2    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 11257, rend_intergenic: 4920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14522, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17348, rend_intergenic: 15544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31017, rend_intergenic: 18141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41988, rend_intergenic: 31350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43322, rend_intergenic: 42146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45187, rend_intergenic: 43904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48979, rend_intergenic: 46228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61777, rend_intergenic: 55102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80755, rend_intergenic: 76611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support