-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_16071446-16313317 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 206904, 207233 Couldn't classify 208545, 208756 Sorry, prediction pasa_asmbl_46075.p1 fails validation. (GAC) CA 206904-207233 GT AGG (GTG) AG 207356-207551 GT CGG (CGT) AG 207774-207941 GT GGG (CCG) AG 208031-208179 GT ACG (GCT) AG 208262-208328 GT AGG (CCT) AG 208545-208756 CT AGC -recovered pasa_asmbl_46075.p1, internal, 207356, 207551 -recovered pasa_asmbl_46075.p1, internal, 207774, 207941 -recovered pasa_asmbl_46075.p1, internal, 208031, 208179 -recovered pasa_asmbl_46075.p1, internal, 208262, 208328 Couldn't classify 201940, 202167 Couldn't classify 206518, 206661 Sorry, prediction pasa_asmbl_46074.p1 fails validation. (TGG) AC 201940-202167 GT AGG (GCG) AG 202299-202769 GT AGG (CTG) AG 204076-204198 GT GAG (GAC) AG 204361-204456 GT AGG (GAG) AG 204621-204890 GT AGG (GTG) AG 205274-205426 GT AGG (GAG) AG 205606-205733 GT AAG (GTG) AG 205884-205965 GT AGG (TAC) AG 206114-206290 GT AGG (GTG) AG 206518-206661 GG CAG -recovered pasa_asmbl_46074.p1, internal, 202299, 202769 -recovered pasa_asmbl_46074.p1, internal, 204076, 204198 -recovered pasa_asmbl_46074.p1, internal, 204361, 204456 -recovered pasa_asmbl_46074.p1, internal, 204621, 204890 -recovered pasa_asmbl_46074.p1, internal, 205274, 205426 -recovered pasa_asmbl_46074.p1, internal, 205606, 205733 -recovered pasa_asmbl_46074.p1, internal, 205884, 205965 -recovered pasa_asmbl_46074.p1, internal, 206114, 206290 Valid prediction for GlimmerHMM_glimmerT_13322-T1 Valid prediction for GlimmerHMM_glimmerT_13350-T1 Couldn't classify 169484, 169562 Couldn't classify 171723, 172070 Sorry, prediction pasa_asmbl_46063.p1 fails validation. (GCC) AC 169484-169562 GT AGG (ATG) AG 171538-171620 GT AGG (GTC) AG 171723-172070 AA AGA add_exon() Sorry, pasa_asmbl_46063.p1 171538-171620-initial-1 is invalid. -recovered pasa_asmbl_46063.p1, initial, 171538, 171620 -recovered pasa_asmbl_46063.p1, internal, 171538, 171620 Valid prediction for snap_scaffold_5-snap.2965-T1 Valid prediction for snap_scaffold_5-snap.2986-T1 Valid prediction for snap_scaffold_5-snap.2988-T1 Valid prediction for snap_scaffold_5-snap.2966-T1 Valid prediction for HiQ_model.g8867.t1 Valid prediction for Augustus_model.g8858.t1 Valid prediction for snap_scaffold_5-snap.2982-T1 Valid prediction for Augustus_model.g8869.t1 Valid prediction for GlimmerHMM_glimmerT_13348-T1 Valid prediction for snap_scaffold_5-snap.2995-T1 Valid prediction for HiQ_model.g8862.t1 Valid prediction for Augustus_model.g8868.t1 Valid prediction for HiQ_model.g8864.t1 Couldn't classify 193380, 193562 Sorry, prediction pasa_asmbl_46069.p2 fails validation. (ATG) CC 192798-192842 GT CTG (CCT) AG 192965-193063 GT AGG (TGT) AG 193380-193562 AG CCA -recovered pasa_asmbl_46069.p2, initial, 192798, 192842 -recovered pasa_asmbl_46069.p2, internal, 192965, 193063 Valid prediction for GlimmerHMM_glimmerT_13331-T1 Valid prediction for GlimmerHMM_glimmerT_13338-T1 Valid prediction for snap_scaffold_5-snap.2971-T1 Valid prediction for GlimmerHMM_glimmerT_13324-T1 Valid prediction for Augustus_model.g8871.t1 Valid prediction for CodingQuarry_transcript_52409-T1 Valid prediction for GlimmerHMM_glimmerT_13328-T1 Valid prediction for CodingQuarry_transcript_52412-T1 Valid prediction for GlimmerHMM_glimmerT_13342-T1 Valid prediction for CodingQuarry_transcript_52407-T1 Valid prediction for Augustus_model.g8873.t1 Valid prediction for Augustus_model.g8870.t1 Valid prediction for Augustus_model.g8855.t1 Valid prediction for GlimmerHMM_glimmerT_13347-T1 Valid prediction for snap_scaffold_5-snap.2964-T1 Valid prediction for CodingQuarry_transcript_52414-T1 Valid prediction for Augustus_model.g8857.t1 Couldn't classify 193726, 193845 Couldn't classify 195439, 195519 Sorry, prediction pasa_asmbl_46371.p1 fails validation. (CAG) TG 193726-193845 GT AGG (AGC) AG 193932-193994 GT CGG (AAG) AG 194151-194228 GT AGG (CAG) AG 194337-194387 GT AGG (ATC) AG 194579-194747 GT GGG (TTT) AG 195003-195103 GT TGG (GAC) AG 195439-195519 TG ACT -recovered pasa_asmbl_46371.p1, internal, 193932, 193994 -recovered pasa_asmbl_46371.p1, internal, 194151, 194228 -recovered pasa_asmbl_46371.p1, internal, 194337, 194387 -recovered pasa_asmbl_46371.p1, internal, 194579, 194747 -recovered pasa_asmbl_46371.p1, internal, 195003, 195103 Valid prediction for GlimmerHMM_glimmerT_13340-T1 Valid prediction for snap_scaffold_5-snap.3006-T1 Valid prediction for snap_scaffold_5-snap.3002-T1 Couldn't classify 77450, 77533 Couldn't classify 77744, 77930 Sorry, prediction CodingQuarry_transcript_52411-T1 fails validation. (ATG) AA 76209-76247 GT AGG (CTG) AG 76531-76589 GT ATG (GGA) AG 76680-76725 GT TGG (GCT) AG 76802-76917 GT AGG (TAA) AG 77213-77257 GT CAG (GAT) AG 77450-77533 GG GAG (GGT) TG 77744-77930 CG GAC -recovered CodingQuarry_transcript_52411-T1, initial, 76209, 76247 add_exon() Sorry, CodingQuarry_transcript_52411-T1 77450-77533-terminal-1 is invalid. -recovered CodingQuarry_transcript_52411-T1, terminal, 77450, 77533 -recovered CodingQuarry_transcript_52411-T1, internal, 76531, 76589 -recovered CodingQuarry_transcript_52411-T1, internal, 76680, 76725 -recovered CodingQuarry_transcript_52411-T1, internal, 76802, 76917 -recovered CodingQuarry_transcript_52411-T1, internal, 77213, 77257 Valid prediction for snap_scaffold_5-snap.2983-T1 Couldn't classify 2419, 2446 Sorry, prediction pasa_asmbl_46042.p1 fails validation. (CTG) TT 2419-2446 GT GAG (TAG) AG 2864-3040 GT AGG (CTC) AG 3309-3422 GT CAG (GTG) AG 3588-3737 GT AGG (GAG) AG 4530-4661 GT AGG (TCA) AG 4924-4996 GT AGG (CGA) AG 5518-5794 AC AAA -recovered pasa_asmbl_46042.p1, terminal, 5518, 5794 -recovered pasa_asmbl_46042.p1, internal, 2864, 3040 -recovered pasa_asmbl_46042.p1, internal, 3309, 3422 -recovered pasa_asmbl_46042.p1, internal, 3588, 3737 -recovered pasa_asmbl_46042.p1, internal, 4530, 4661 -recovered pasa_asmbl_46042.p1, internal, 4924, 4996 Valid prediction for pasa_asmbl_46047.p1 Valid prediction for Augustus_model.g8859.t1 Valid prediction for snap_scaffold_5-snap.2997-T1 Couldn't classify 20727, 20798 Couldn't classify 21016, 21049 Sorry, prediction CodingQuarry_transcript_52408-T1 fails validation. (ATG) TT 14000-14108 GT TGG (GCA) AG 14550-14738 GT CGG (GGT) AG 14873-14985 GT AAG (GGA) AG 15192-15395 GT AGG (GCT) AG 15521-15759 GT AAG (GGA) AG 15980-16238 GT AGG (GTG) AG 16609-16749 GT AGG (GCC) AG 16831-16913 GT AAG (GCA) AG 17068-17167 GT AGG (GTT) AG 17439-17546 GT TGG (TAC) AG 17702-17887 GT AGG (GTG) AG 18032-18211 GT AGG (ACG) AG 18893-19039 GT AGG (GAG) AG 19445-19582 GT AGG (GAG) AG 19689-19805 GT TGG (GTG) AG 19914-20020 GT CGG (CCT) AG 20104-20245 GT AGG (GAG) AG 20500-20645 GT AAG (GGA) AG 20727-20798 CA CAC (TCC) CG 21016-21049 AG AGA -recovered CodingQuarry_transcript_52408-T1, initial, 14000, 14108 -recovered CodingQuarry_transcript_52408-T1, internal, 14550, 14738 -recovered CodingQuarry_transcript_52408-T1, internal, 14873, 14985 -recovered CodingQuarry_transcript_52408-T1, internal, 15192, 15395 -recovered CodingQuarry_transcript_52408-T1, internal, 15521, 15759 -recovered CodingQuarry_transcript_52408-T1, internal, 15980, 16238 -recovered CodingQuarry_transcript_52408-T1, internal, 16609, 16749 -recovered CodingQuarry_transcript_52408-T1, internal, 16831, 16913 -recovered CodingQuarry_transcript_52408-T1, internal, 17068, 17167 -recovered CodingQuarry_transcript_52408-T1, internal, 17439, 17546 -recovered CodingQuarry_transcript_52408-T1, internal, 17702, 17887 -recovered CodingQuarry_transcript_52408-T1, internal, 18032, 18211 -recovered CodingQuarry_transcript_52408-T1, internal, 18893, 19039 -recovered CodingQuarry_transcript_52408-T1, internal, 19445, 19582 -recovered CodingQuarry_transcript_52408-T1, internal, 19689, 19805 -recovered CodingQuarry_transcript_52408-T1, internal, 19914, 20020 -recovered CodingQuarry_transcript_52408-T1, internal, 20104, 20245 -recovered CodingQuarry_transcript_52408-T1, internal, 20500, 20645 Couldn't classify 63675, 63763 Sorry, prediction pasa_asmbl_46052.p1 fails validation. (GAC) CA 63675-63763 GT AAG (AGG) AG 64078-64236 GT AGG (GTT) AG 64335-64460 GT CGG (TGA) AG 64556-64649 GT AGG (GTT) AG 64922-65108 GT TGG (GTG) AG 65286-65518 GT AGG (GAC) AG 66831-66907 GT AGG (TGA) AG 67456-67548 GT AGG (TCG) AG 67789-67879 CA GAC add_exon() Sorry, pasa_asmbl_46052.p1 64078-64236-terminal-1 is invalid. -recovered pasa_asmbl_46052.p1, terminal, 64078, 64236 -recovered pasa_asmbl_46052.p1, terminal, 67789, 67879 -recovered pasa_asmbl_46052.p1, internal, 64078, 64236 -recovered pasa_asmbl_46052.p1, internal, 64335, 64460 -recovered pasa_asmbl_46052.p1, internal, 64556, 64649 -recovered pasa_asmbl_46052.p1, internal, 64922, 65108 -recovered pasa_asmbl_46052.p1, internal, 65286, 65518 -recovered pasa_asmbl_46052.p1, internal, 66831, 66907 -recovered pasa_asmbl_46052.p1, internal, 67456, 67548 Couldn't classify 198809, 198975 Couldn't classify 199482, 199658 Sorry, prediction pasa_asmbl_46072.p1 fails validation. (GAG) CG 198809-198975 GT CAG (GGT) AG 199191-199248 GT TGG (ATG) AG 199482-199658 GT TGG -recovered pasa_asmbl_46072.p1, initial, 199482, 199658 -recovered pasa_asmbl_46072.p1, internal, 199191, 199248 -recovered pasa_asmbl_46072.p1, internal, 199482, 199658 Couldn't classify 180121, 180173 Sorry, prediction pasa_asmbl_46066.p1 fails validation. (CCC) GC 180121-180173 GT AGG (GTT) AG 180423-180609 GT GGG (GGT) AG 180917-181079 GT AGG (GGT) AG 181602-181689 GT CGG (AGC) AG 181923-182029 GT GGG (GTC) AG 182172-182263 GT AGG (GCC) AG 182358-182447 GT AGG (GAC) AG 182558-182833 GT AGG (TTG) AG 182951-183033 GT GGG (GAA) AG 183207-183379 GT TGG (GTC) AG 183682-183767 GT AGG (GAG) AG 183974-184092 GT AGG (CGA) AG 184513-184859 GT TGG (TCT) AG 185053-185148 GT AGG (CTC) AG 185263-185372 GT AGG (GAG) AG 185508-185862 GT AGG (GTA) AG 185955-186043 GA AAG -recovered pasa_asmbl_46066.p1, terminal, 185955, 186043 -recovered pasa_asmbl_46066.p1, internal, 180423, 180609 -recovered pasa_asmbl_46066.p1, internal, 180917, 181079 -recovered pasa_asmbl_46066.p1, internal, 181602, 181689 -recovered pasa_asmbl_46066.p1, internal, 181923, 182029 -recovered pasa_asmbl_46066.p1, internal, 182172, 182263 -recovered pasa_asmbl_46066.p1, internal, 182358, 182447 -recovered pasa_asmbl_46066.p1, internal, 182558, 182833 -recovered pasa_asmbl_46066.p1, internal, 182951, 183033 -recovered pasa_asmbl_46066.p1, internal, 183207, 183379 -recovered pasa_asmbl_46066.p1, internal, 183682, 183767 -recovered pasa_asmbl_46066.p1, internal, 183974, 184092 -recovered pasa_asmbl_46066.p1, internal, 184513, 184859 -recovered pasa_asmbl_46066.p1, internal, 185053, 185148 -recovered pasa_asmbl_46066.p1, internal, 185263, 185372 -recovered pasa_asmbl_46066.p1, internal, 185508, 185862 Valid prediction for snap_scaffold_5-snap.2967-T1 Valid prediction for pasa_asmbl_46076.p1 Valid prediction for GlimmerHMM_glimmerT_13343-T1 Valid prediction for CodingQuarry_transcript_52416-T1 Valid prediction for snap_scaffold_5-snap.2989-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for pasa_asmbl_46059.p1 Couldn't classify 2, 53 Couldn't classify 1097, 1212 Sorry, prediction pasa_asmbl_46041.p1 fails validation. (GGG) T 2-53 GT AGG (CGC) AG 184-254 GT AGG (GAA) AG 584-809 GT TGG (TTC) AG 1097-1212 GT AGG -recovered pasa_asmbl_46041.p1, internal, 184, 254 -recovered pasa_asmbl_46041.p1, internal, 584, 809 -recovered pasa_asmbl_46041.p1, internal, 1097, 1212 Couldn't classify 49288, 49342 Sorry, prediction pasa_asmbl_46049.p2 fails validation. (GAG) GG 49288-49342 GT AGG (GTC) AG 49509-49633 GT AGG (GTG) AG 50189-50317 GC AAG -recovered pasa_asmbl_46049.p2, terminal, 50189, 50317 -recovered pasa_asmbl_46049.p2, internal, 49509, 49633 -recovered pasa_asmbl_46049.p2, internal, 50189, 50317 Valid prediction for CodingQuarry_transcript_52413-T1 Valid prediction for GlimmerHMM_glimmerT_13333-T1 Valid prediction for GlimmerHMM_glimmerT_13316-T1 Valid prediction for pasa_asmbl_46054.p1 Valid prediction for GlimmerHMM_glimmerT_13341-T1 Valid prediction for snap_scaffold_5-snap.2970-T1 Valid prediction for snap_scaffold_5-snap.2999-T1 Valid prediction for snap_scaffold_5-snap.2993-T1 Valid prediction for GlimmerHMM_glimmerT_13326-T1 Valid prediction for snap_scaffold_5-snap.2963-T1 Valid prediction for GlimmerHMM_glimmerT_13321-T1 Couldn't classify 41188, 41286 Couldn't classify 43476, 43490 Sorry, prediction pasa_asmbl_46048.p1 fails validation. (ACC) GC 41188-41286 GT AGG (GAG) AG 41750-41871 GT AGG (TAT) AG 43181-43292 GT CGG (GAG) AG 43476-43490 CG TGC -recovered pasa_asmbl_46048.p1, internal, 41750, 41871 -recovered pasa_asmbl_46048.p1, internal, 43181, 43292 Valid prediction for CodingQuarry_transcript_52415-T1 Valid prediction for GlimmerHMM_glimmerT_13346-T1 Valid prediction for snap_scaffold_5-snap.2980-T1 Couldn't classify 80450, 80591 Sorry, prediction pasa_asmbl_46055.p1 fails validation. (CAC) AC 80450-80591 GT CTG (ATT) AG 80863-80940 GT AGG (AGG) AG 81143-81311 GT AGG (GAA) AG 81444-81606 GT GGG (AGT) AG 81974-82036 GT CTG (GCA) AG 82164-82292 GT AAG (AGA) AG 82423-82551 GT ATG (TGT) AG 82932-83153 GT AGG (GTG) AG 83277-83378 GT AGG (GCT) AG 83472-83669 GT CTG (AAA) AG 83918-84002 GT AGG (CCG) AG 84263-84290 GT AGG (AGA) AG 84417-84513 GT AGG (GCC) AG 84676-84736 GT TGG (GAC) AG 84842-84919 GT AGG (GAG) AG 85279-85407 GT GCG (AGA) AG 86165-86270 GT CAG (CGT) AG 86594-86821 GT TGG (TGA) AG 86908-87138 GT GAG (ATA) AG 87359-87407 GT AGG (GAA) AG 87594-87752 TC GAT -recovered pasa_asmbl_46055.p1, terminal, 87594, 87752 -recovered pasa_asmbl_46055.p1, internal, 80863, 80940 -recovered pasa_asmbl_46055.p1, internal, 81143, 81311 -recovered pasa_asmbl_46055.p1, internal, 81444, 81606 -recovered pasa_asmbl_46055.p1, internal, 81974, 82036 -recovered pasa_asmbl_46055.p1, internal, 82164, 82292 -recovered pasa_asmbl_46055.p1, internal, 82423, 82551 -recovered pasa_asmbl_46055.p1, internal, 82932, 83153 -recovered pasa_asmbl_46055.p1, internal, 83277, 83378 -recovered pasa_asmbl_46055.p1, internal, 83472, 83669 -recovered pasa_asmbl_46055.p1, internal, 83918, 84002 -recovered pasa_asmbl_46055.p1, internal, 84263, 84290 -recovered pasa_asmbl_46055.p1, internal, 84417, 84513 -recovered pasa_asmbl_46055.p1, internal, 84676, 84736 -recovered pasa_asmbl_46055.p1, internal, 84842, 84919 -recovered pasa_asmbl_46055.p1, internal, 85279, 85407 -recovered pasa_asmbl_46055.p1, internal, 86165, 86270 -recovered pasa_asmbl_46055.p1, internal, 86594, 86821 -recovered pasa_asmbl_46055.p1, internal, 86908, 87138 -recovered pasa_asmbl_46055.p1, internal, 87359, 87407 Valid prediction for snap_scaffold_5-snap.2977-T1 Valid prediction for GlimmerHMM_glimmerT_13330-T1 Valid prediction for GlimmerHMM_glimmerT_13345-T1 Valid prediction for HiQ_model.g8854.t1 Valid prediction for GlimmerHMM_glimmerT_13325-T1 Valid prediction for pasa_asmbl_46057.p1 Valid prediction for GlimmerHMM_glimmerT_13320-T1 Valid prediction for GlimmerHMM_glimmerT_13329-T1 Valid prediction for snap_scaffold_5-snap.2972-T1 Valid prediction for pasa_asmbl_46081.p1 Valid prediction for HiQ_model.g8861.t1 Couldn't classify 173046, 173270 Couldn't classify 173547, 173624 Sorry, prediction pasa_asmbl_46397.p1 fails validation. (GAT) TG 173046-173270 GT AGG (GTA) AG 173547-173624 CC CCC Valid prediction for GlimmerHMM_glimmerT_13315-T1 Valid prediction for snap_scaffold_5-snap.2969-T1 Valid prediction for snap_scaffold_5-snap.2976-T1 Couldn't classify 195863, 195877 Couldn't classify 197223, 197275 Sorry, prediction pasa_asmbl_46071.p1 fails validation. (GAG) TG 195863-195877 GT AGG (GTG) AG 196327-196467 GT AGG (CAT) AG 196605-196812 GT AGG (GCG) AG 196949-197050 GT CGG (TCA) AG 197223-197275 TA AGT -recovered pasa_asmbl_46071.p1, internal, 196327, 196467 -recovered pasa_asmbl_46071.p1, internal, 196605, 196812 -recovered pasa_asmbl_46071.p1, internal, 196949, 197050 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_13344-T1 Valid prediction for snap_scaffold_5-snap.2978-T1 Valid prediction for snap_scaffold_5-snap.2991-T1 Valid prediction for Augustus_model.g8872.t1 Valid prediction for GlimmerHMM_glimmerT_13336-T1 Valid prediction for snap_scaffold_5-snap.2979-T1 Valid prediction for GlimmerHMM_glimmerT_13334-T1 Valid prediction for snap_scaffold_5-snap.2985-T1 Valid prediction for snap_scaffold_5-snap.2975-T1 Valid prediction for snap_scaffold_5-snap.3001-T1 Valid prediction for GlimmerHMM_glimmerT_13323-T1 Valid prediction for Augustus_model.g8860.t1 Valid prediction for CodingQuarry_transcript_52410-T1 Valid prediction for snap_scaffold_5-snap.2996-T1 Valid prediction for GlimmerHMM_glimmerT_13335-T1 Valid prediction for snap_scaffold_5-snap.2984-T1 Valid prediction for snap_scaffold_5-snap.2992-T1 Valid prediction for GlimmerHMM_glimmerT_13332-T1 Valid prediction for GlimmerHMM_glimmerT_13318-T1 Valid prediction for GlimmerHMM_glimmerT_13349-T1 Couldn't classify 171123, 171257 Sorry, prediction pasa_asmbl_45060.p1 fails validation. (TGT) CC 171123-171257 GT AGG (TTT) AG 171576-171892 GT AGG (AGT) AG 172230-172344 CC GAC -recovered pasa_asmbl_45060.p1, terminal, 172230, 172344 -recovered pasa_asmbl_45060.p1, internal, 171576, 171892 Valid prediction for snap_scaffold_5-snap.2994-T1 Couldn't classify 138578, 138989 Sorry, prediction pasa_asmbl_44745.p1 fails validation. (AAC) TG 138578-138989 GT AGG (GCA) AG 139961-140157 CG GAC -recovered pasa_asmbl_44745.p1, terminal, 139961, 140157 Valid prediction for snap_scaffold_5-snap.2962-T1 Valid prediction for Augustus_model.g8853.t1 Valid prediction for GlimmerHMM_glimmerT_13337-T1 Valid prediction for HiQ_model.g8866.t1 Valid prediction for snap_scaffold_5-snap.2981-T1 Valid prediction for Augustus_model.g8865.t1 Valid prediction for GlimmerHMM_glimmerT_13317-T1 Valid prediction for Augustus_model.g8856.t1 Valid prediction for GlimmerHMM_glimmerT_13314-T1 Valid prediction for Augustus_model.g8863.t1 Valid prediction for GlimmerHMM_glimmerT_13339-T1 Valid prediction for GlimmerHMM_glimmerT_13319-T1 Valid prediction for snap_scaffold_5-snap.3005-T1 Valid prediction for snap_scaffold_5-snap.2998-T1 Valid prediction for snap_scaffold_5-snap.3003-T1 Valid prediction for snap_scaffold_5-snap.3004-T1 Couldn't classify 109644, 109733 Sorry, prediction pasa_asmbl_44747.p1 fails validation. (TCA) TC 109644-109733 GT AAG (ATT) AG 110165-110212 GT ACG (ACA) AG 110628-110639 GT TTG (CCT) AG 110779-110876 GT AGG (GTT) AG 111025-111140 GT AGG (GTA) AG 111240-111300 GT CGG (CAC) AG 111402-111534 GT AGG (AGT) AG 111682-111815 GT ATG (GAA) AG 111962-112064 GT AGG (CTG) AG 112144-112290 GT CGG (GCC) AG 112461-112555 GT AAG (GCT) AG 112775-112835 GT GGG (TTG) AG 113175-113276 AC AAA add_exon() Sorry, pasa_asmbl_44747.p1 112461-112555-terminal-2 is invalid. -recovered pasa_asmbl_44747.p1, terminal, 112461, 112555 -recovered pasa_asmbl_44747.p1, terminal, 113175, 113276 -recovered pasa_asmbl_44747.p1, internal, 110165, 110212 -recovered pasa_asmbl_44747.p1, internal, 110628, 110639 -recovered pasa_asmbl_44747.p1, internal, 110779, 110876 -recovered pasa_asmbl_44747.p1, internal, 111025, 111140 -recovered pasa_asmbl_44747.p1, internal, 111240, 111300 -recovered pasa_asmbl_44747.p1, internal, 111402, 111534 -recovered pasa_asmbl_44747.p1, internal, 111682, 111815 -recovered pasa_asmbl_44747.p1, internal, 111962, 112064 -recovered pasa_asmbl_44747.p1, internal, 112144, 112290 -recovered pasa_asmbl_44747.p1, internal, 112461, 112555 -recovered pasa_asmbl_44747.p1, internal, 112775, 112835 Valid prediction for GlimmerHMM_glimmerT_13327-T1 Valid prediction for snap_scaffold_5-snap.2973-T1 Valid prediction for snap_scaffold_5-snap.2974-T1 Valid prediction for snap_scaffold_5-snap.2968-T1 Valid prediction for snap_scaffold_5-snap.2987-T1 Valid prediction for snap_scaffold_5-snap.3000-T1 Valid prediction for snap_scaffold_5-snap.2990-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12595, rend_intergenic: 9526 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38744, rend_intergenic: 37656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46688, rend_intergenic: 39384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70390, rend_intergenic: 65282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87783, rend_intergenic: 82776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162055, rend_intergenic: 150746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162543, rend_intergenic: 162331 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168203, rend_intergenic: 165074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174155, rend_intergenic: 168892 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186043, rend_intergenic: 178794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213312, rend_intergenic: 202295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215079, rend_intergenic: 213390 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223567, rend_intergenic: 215128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 241872 -exon list size: 720 building trellis 0.1 0.3 0.4 0.6 0.7 0.8 1.0 1.1 1.2 1.4 1.5 1.7 1.8 1.9 2.1 2.2 2.4 2.5 2.6 2.8 2.9 3.0 3.2 3.3 3.5 3.6 3.7 3.9 4.0 4.2 4.3 4.4 4.6 4.7 4.8 5.0 5.1 5.3 5.4 5.5 5.7 5.8 6.0 6.1 6.2 6.4 6.5 6.6 6.8 6.9 7.1 7.2 7.3 7.5 7.6 7.8 7.9 8.0 8.2 8.3 8.4 8.6 8.7 8.9 9.0 9.1 9.3 9.4 9.6 9.7 9.8 10.0 10.1 10.2 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.4 11.5 11.6 11.8 11.9 12.0 12.2 12.3 12.5 12.6 12.7 12.9 13.0 13.2 13.3 13.4 13.6 13.7 13.9 14.0 14.1 14.3 14.4 14.5 14.7 14.8 15.0 15.1 15.2 15.4 15.5 15.7 15.8 15.9 16.1 16.2 16.3 16.5 16.6 16.8 16.9 17.0 17.2 17.3 17.5 17.6 17.7 17.9 18.0 18.1 18.3 18.4 18.6 18.7 18.8 19.0 19.1 19.3 19.4 19.5 19.7 19.8 19.9 20.1 20.2 20.4 20.5 20.6 20.8 20.9 21.1 21.2 21.3 21.5 21.6 21.7 21.9 22.0 22.2 22.3 22.4 22.6 22.7 22.9 23.0 23.1 23.3 23.4 23.5 23.7 23.8 24.0 24.1 24.2 24.4 24.5 24.7 24.8 24.9 25.1 25.2 25.3 25.5 25.6 25.8 25.9 26.0 26.2 26.3 26.5 26.6 26.7 26.9 27.0 27.1 27.3 27.4 27.6 27.7 27.8 28.0 28.1 28.3 28.4 28.5 28.7 28.8 28.9 29.1 29.2 29.4 29.5 29.6 29.8 29.9 30.1 30.2 30.3 30.5 30.6 30.7 30.9 31.0 31.2 31.3 31.4 31.6 31.7 31.9 32.0 32.1 32.3 32.4 32.5 32.7 32.8 33.0 33.1 33.2 33.4 33.5 33.7 33.8 33.9 34.1 34.2 34.3 34.5 34.6 34.8 34.9 35.0 35.2 35.3 35.5 35.6 35.7 35.9 36.0 36.1 36.3 36.4 36.6 36.7 36.8 37.0 37.1 37.3 37.4 37.5 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.6 38.8 38.9 39.1 39.2 39.3 39.5 39.6 39.8 39.9 40.0 40.2 40.3 40.4 40.6 40.7 40.9 41.0 41.1 41.3 41.4 41.6 41.7 41.8 42.0 42.1 42.2 42.4 42.5 42.7 42.8 42.9 43.1 43.2 43.4 43.5 43.6 43.8 43.9 44.0 44.2 44.3 44.5 44.6 44.7 44.9 45.0 45.2 45.3 45.4 45.6 45.7 45.8 46.0 46.1 46.3 46.4 46.5 46.7 46.8 47.0 47.1 47.2 47.4 47.5 47.6 47.8 47.9 48.1 48.2 48.3 48.5 48.6 48.8 48.9 49.0 49.2 49.3 49.4 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.6 50.7 50.8 51.0 51.1 51.2 51.4 51.5 51.7 51.8 51.9 52.1 52.2 52.4 52.5 52.6 52.8 52.9 53.0 53.2 53.3 53.5 53.6 53.7 53.9 54.0 54.2 54.3 54.4 54.6 54.7 54.8 55.0 55.1 55.3 55.4 55.5 55.7 55.8 56.0 56.1 56.2 56.4 56.5 56.6 56.8 56.9 57.1 57.2 57.3 57.5 57.6 57.8 57.9 58.0 58.2 58.3 58.4 58.6 58.7 58.9 59.0 59.1 59.3 59.4 59.6 59.7 59.8 60.0 60.1 60.2 60.4 60.5 60.7 60.8 60.9 61.1 61.2 61.4 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.5 62.6 62.7 62.9 63.0 63.2 63.3 63.4 63.6 63.7 63.9 64.0 64.1 64.3 64.4 64.5 64.7 64.8 65.0 65.1 65.2 65.4 65.5 65.7 65.8 65.9 66.1 66.2 66.3 66.5 66.6 66.8 66.9 67.0 67.2 67.3 67.5 67.6 67.7 67.9 68.0 68.1 68.3 68.4 68.6 68.7 68.8 69.0 69.1 69.3 69.4 69.5 69.7 69.8 69.9 70.1 70.2 70.4 70.5 70.6 70.8 70.9 71.1 71.2 71.3 71.5 71.6 71.7 71.9 72.0 72.2 72.3 72.4 72.6 72.7 72.9 73.0 73.1 73.3 73.4 73.5 73.7 73.8 74.0 74.1 74.2 74.4 74.5 74.7 74.8 74.9 75.1 75.2 75.3 75.5 75.6 75.8 75.9 76.0 76.2 76.3 76.5 76.6 76.7 76.9 77.0 77.1 77.3 77.4 77.6 77.7 77.8 78.0 78.1 78.3 78.4 78.5 78.7 78.8 78.9 79.1 79.2 79.4 79.5 79.6 79.8 79.9 80.1 80.2 80.3 80.5 80.6 80.7 80.9 81.0 81.2 81.3 81.4 81.6 81.7 81.9 82.0 82.1 82.3 82.4 82.5 82.7 82.8 83.0 83.1 83.2 83.4 83.5 83.7 83.8 83.9 84.1 84.2 84.3 84.5 84.6 84.8 84.9 85.0 85.2 85.3 85.5 85.6 85.7 85.9 86.0 86.1 86.3 86.4 86.6 86.7 86.8 87.0 87.1 87.3 87.4 87.5 87.7 87.8 88.0 88.1 88.2 88.4 88.5 88.6 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.8 89.9 90.0 90.2 90.3 90.4 90.6 90.7 90.9 91.0 91.1 91.3 91.4 91.6 91.7 91.8 92.0 92.1 92.2 92.4 92.5 92.7 92.8 92.9 93.1 93.2 93.4 93.5 93.6 93.8 93.9 94.0 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.2 95.3 95.4 95.6 95.7 95.8 96.0 96.1 96.3 96.4 96.5 96.7 96.8 97.0 97.1 97.2 97.4 97.5 97.6 97.8 97.9 98.1 98.2 98.3 98.5 98.6 98.8 98.9 99.0 99.2 99.3 99.4 99.6 99.7 99.9 -found 30 predictions from path traversal Error with prediction: snap lend_intergenic: 12595, rend_intergenic: 9526 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38744, rend_intergenic: 37656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46688, rend_intergenic: 39384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70390, rend_intergenic: 65282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87783, rend_intergenic: 82776 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162055, rend_intergenic: 150746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162543, rend_intergenic: 162331 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168203, rend_intergenic: 165074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174155, rend_intergenic: 168892 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186043, rend_intergenic: 178794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213312, rend_intergenic: 202295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215079, rend_intergenic: 213390 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223567, rend_intergenic: 215128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 27 predictions persist after filtering for low support