-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_13387560-13615180

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_5-snap.2501-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.2489-T1
Valid prediction for snap_scaffold_5-snap.2472-T1
Valid prediction for GlimmerHMM_glimmerT_12948-T1
Valid prediction for Augustus_model.g8603.t1
Valid prediction for snap_scaffold_5-snap.2490-T1
Valid prediction for Augustus_model.g8594.t1
Valid prediction for snap_scaffold_5-snap.2477-T1
Valid prediction for GlimmerHMM_glimmerT_12954-T1
Valid prediction for snap_scaffold_5-snap.2469-T1
Valid prediction for GlimmerHMM_glimmerT_12951-T1
Valid prediction for snap_scaffold_5-snap.2482-T1
Valid prediction for Augustus_model.g8602.t1
Valid prediction for GlimmerHMM_glimmerT_12950-T1
Valid prediction for GlimmerHMM_glimmerT_12952-T1
Valid prediction for snap_scaffold_5-snap.2510-T1
Valid prediction for snap_scaffold_5-snap.2467-T1
Valid prediction for GlimmerHMM_glimmerT_12932-T1
Valid prediction for snap_scaffold_5-snap.2474-T1
Valid prediction for Augustus_model.g8596.t1
Valid prediction for Augustus_model.g8595.t1
Valid prediction for snap_scaffold_5-snap.2480-T1
Valid prediction for snap_scaffold_5-snap.2473-T1
Valid prediction for Augustus_model.g8592.t1
Valid prediction for snap_scaffold_5-snap.2499-T1
Valid prediction for Augustus_model.g8585.t1
Valid prediction for GlimmerHMM_glimmerT_12957-T1
Valid prediction for Augustus_model.g8579.t1
Valid prediction for snap_scaffold_5-snap.2470-T1
Valid prediction for Augustus_model.g8598.t1
Valid prediction for Augustus_model.g8591.t1
Valid prediction for GlimmerHMM_glimmerT_12938-T1
Valid prediction for Augustus_model.g8589.t1
Valid prediction for GlimmerHMM_glimmerT_12942-T1
Valid prediction for snap_scaffold_5-snap.2487-T1
Valid prediction for Augustus_model.g8601.t1
Valid prediction for Augustus_model.g8582.t1
Valid prediction for GlimmerHMM_glimmerT_12927-T1
Valid prediction for snap_scaffold_5-snap.2475-T1
Valid prediction for snap_scaffold_5-snap.2493-T1
Valid prediction for GlimmerHMM_glimmerT_12958-T1
Valid prediction for snap_scaffold_5-snap.2486-T1
Valid prediction for snap_scaffold_5-snap.2506-T1
Valid prediction for snap_scaffold_5-snap.2484-T1
Valid prediction for GlimmerHMM_glimmerT_12945-T1
Valid prediction for GlimmerHMM_glimmerT_12955-T1
Valid prediction for GlimmerHMM_glimmerT_12936-T1
Valid prediction for GlimmerHMM_glimmerT_12956-T1
Valid prediction for Augustus_model.g8586.t1
Valid prediction for snap_scaffold_5-snap.2492-T1
Valid prediction for snap_scaffold_5-snap.2478-T1
Valid prediction for Augustus_model.g8599.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g8593.t1
Valid prediction for snap_scaffold_5-snap.2471-T1
Valid prediction for snap_scaffold_5-snap.2481-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.2509-T1
Valid prediction for snap_scaffold_5-snap.2503-T1
Valid prediction for GlimmerHMM_glimmerT_12931-T1
Valid prediction for GlimmerHMM_glimmerT_12940-T1
Valid prediction for GlimmerHMM_glimmerT_12953-T1
Valid prediction for snap_scaffold_5-snap.2476-T1
Valid prediction for GlimmerHMM_glimmerT_12928-T1
Valid prediction for Augustus_model.g8580.t1
Valid prediction for snap_scaffold_5-snap.2479-T1
Valid prediction for GlimmerHMM_glimmerT_12944-T1
Valid prediction for Augustus_model.g8584.t1
Valid prediction for GlimmerHMM_glimmerT_12939-T1
Valid prediction for GlimmerHMM_glimmerT_12929-T1
Valid prediction for Augustus_model.g8597.t1
Valid prediction for Augustus_model.g8583.t1
Valid prediction for snap_scaffold_5-snap.2468-T1
Valid prediction for snap_scaffold_5-snap.2488-T1
Valid prediction for Augustus_model.g8587.t1
Valid prediction for GlimmerHMM_glimmerT_12946-T1
Valid prediction for GlimmerHMM_glimmerT_12933-T1
Valid prediction for snap_scaffold_5-snap.2502-T1
Valid prediction for Augustus_model.g8590.t1
Valid prediction for snap_scaffold_5-snap.2485-T1
Valid prediction for snap_scaffold_5-snap.2491-T1
Valid prediction for snap_scaffold_5-snap.2507-T1
Valid prediction for GlimmerHMM_glimmerT_12930-T1
Valid prediction for snap_scaffold_5-snap.2494-T1
Valid prediction for snap_scaffold_5-snap.2497-T1
Valid prediction for GlimmerHMM_glimmerT_12926-T1
Valid prediction for Augustus_model.g8581.t1
Valid prediction for snap_scaffold_5-snap.2498-T1
Valid prediction for snap_scaffold_5-snap.2496-T1
Valid prediction for snap_scaffold_5-snap.2504-T1
Valid prediction for Augustus_model.g8600.t1
Valid prediction for GlimmerHMM_glimmerT_12941-T1
Valid prediction for Augustus_model.g8578.t1
Valid prediction for snap_scaffold_5-snap.2495-T1
Valid prediction for GlimmerHMM_glimmerT_12935-T1
Valid prediction for snap_scaffold_5-snap.2505-T1
Valid prediction for GlimmerHMM_glimmerT_12947-T1
Valid prediction for snap_scaffold_5-snap.2500-T1
Valid prediction for GlimmerHMM_glimmerT_12937-T1
Valid prediction for GlimmerHMM_glimmerT_12934-T1
Valid prediction for Augustus_model.g8588.t1
Valid prediction for GlimmerHMM_glimmerT_12943-T1
Valid prediction for GlimmerHMM_glimmerT_12949-T1
Valid prediction for snap_scaffold_5-snap.2483-T1
Valid prediction for snap_scaffold_5-snap.2508-T1
Valid prediction for snap_scaffold_5-snap.2466-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9305, rend_intergenic: 7314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13488, rend_intergenic: 12290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43900, rend_intergenic: 41641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54600, rend_intergenic: 49599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64387, rend_intergenic: 60384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74230, rend_intergenic: 71730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80585, rend_intergenic: 79593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84818, rend_intergenic: 81092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91567, rend_intergenic: 91459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97515, rend_intergenic: 91571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99488, rend_intergenic: 97694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156749, rend_intergenic: 106863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160913, rend_intergenic: 156804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166308, rend_intergenic: 161506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170099, rend_intergenic: 166611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192042, rend_intergenic: 170556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219522, rend_intergenic: 196590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224831, rend_intergenic: 220815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 227621
-exon list size: 423


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.2    
4.5    
4.7    
4.9    
5.2    
5.4    
5.6    
5.9    
6.1    
6.4    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.2    
8.5    
8.7    
8.9    
9.2    
9.4    
9.6    
9.9    
10.1    
10.4    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.5    
15.8    
16.0    
16.2    
16.5    
16.7    
16.9    
17.2    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.8    
23.1    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.6    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.2    
28.5    
28.7    
28.9    
29.2    
29.4    
29.6    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.8    
43.1    
43.3    
43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.5    
52.7    
52.9    
53.2    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
70.8    
71.1    
71.3    
71.5    
71.8    
72.0    
72.2    
72.5    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 9305, rend_intergenic: 7314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13488, rend_intergenic: 12290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43900, rend_intergenic: 41641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54600, rend_intergenic: 49599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64387, rend_intergenic: 60384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74230, rend_intergenic: 71730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80585, rend_intergenic: 79593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84818, rend_intergenic: 81092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91567, rend_intergenic: 91459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97515, rend_intergenic: 91571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99488, rend_intergenic: 97694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156749, rend_intergenic: 106863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160913, rend_intergenic: 156804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166308, rend_intergenic: 161506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170099, rend_intergenic: 166611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192042, rend_intergenic: 170556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219522, rend_intergenic: 196590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224831, rend_intergenic: 220815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support