-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_5/scaffold_5_10818265-11068173

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g8338.t1
Couldn't classify 142503, 142612
Couldn't classify 142717, 142808
Sorry, prediction CodingQuarry_transcript_52241-T1 fails validation.
(ATG)	 TG	141916-141955	GT	AGG
(AGG)	 AG	142059-142195	GT	AGG
(GGT)	 AG	142351-142409	GT	AAG
(AGA)	 AG	142503-142612	AT	AGA
(ATA)	 AC	142717-142808	GT	ATG
(GCA)	 AG	142896-143028	GT	AGG
(GGC)	 AG	143143-143212	GT	AGG
(TCT)	 AG	143317-143417	GT	AGG
(ACT)	 AG	143625-143723	GT	TGG
(ATA)	 AG	143809-143828	GT	GAG
-recovered CodingQuarry_transcript_52241-T1, initial, 141916, 141955
-recovered CodingQuarry_transcript_52241-T1, terminal, 143809, 143828
-recovered CodingQuarry_transcript_52241-T1, internal, 142059, 142195
-recovered CodingQuarry_transcript_52241-T1, internal, 142351, 142409
-recovered CodingQuarry_transcript_52241-T1, internal, 142896, 143028
-recovered CodingQuarry_transcript_52241-T1, internal, 143143, 143212
-recovered CodingQuarry_transcript_52241-T1, internal, 143317, 143417
-recovered CodingQuarry_transcript_52241-T1, internal, 143625, 143723
-recovered CodingQuarry_transcript_52241-T1, internal, 143809, 143828
Couldn't classify 146649, 147574
Sorry, prediction pasa_asmbl_45710.p1 fails validation.
(ATG)	 AA	145406-145475	GT	TGG
(GGG)	 AG	146649-147574	CG	CCC
-recovered pasa_asmbl_45710.p1, initial, 145406, 145475
Valid prediction for GlimmerHMM_glimmerT_12597-T1
Valid prediction for GlimmerHMM_glimmerT_12598-T1
Couldn't classify 164837, 164900
Couldn't classify 166838, 167233
Sorry, prediction pasa_asmbl_45719.p1 fails validation.
(GGG)	 CA	164837-164900	GT	AAG
(TTC)	 AG	164997-165374	GT	AGG
(GTG)	 AG	165520-165580	GT	GGG
(CTG)	 AG	165779-165887	GT	AGG
(TAC)	 AG	166005-166106	GT	AGG
(GGA)	 AG	166201-166426	GT	GGG
(AAG)	 AG	166528-166589	GT	AGG
(GCA)	 AG	166675-166740	GT	AAG
(CTC)	 AG	166838-167233	CA	ACC
-recovered pasa_asmbl_45719.p1, internal, 164997, 165374
-recovered pasa_asmbl_45719.p1, internal, 165520, 165580
-recovered pasa_asmbl_45719.p1, internal, 165779, 165887
-recovered pasa_asmbl_45719.p1, internal, 166005, 166106
-recovered pasa_asmbl_45719.p1, internal, 166201, 166426
-recovered pasa_asmbl_45719.p1, internal, 166528, 166589
-recovered pasa_asmbl_45719.p1, internal, 166675, 166740
Valid prediction for CodingQuarry_transcript_52238-T1
Valid prediction for snap_scaffold_5-snap.2006-T1
Couldn't classify 153656, 153657
Sorry, prediction pasa_asmbl_45717.p1 fails validation.
(ATG)	 TC	153656-153657	GT	ATG
(GCA)	 AG	155092-155205	GT	AGG
(TTG)	 AG	155304-155373	GT	ATG
(GAG)	 AG	155479-155577	GT	AGG
(TTA)	 AG	155651-155740	GT	AGG
(ATG)	 AG	156073-156129	GT	ATG
(GAT)	 AG	156223-156250	GT	AAG
(AAA)	 AG	156784-156803	AA	GAA
-recovered pasa_asmbl_45717.p1, initial, 156073, 156129
-recovered pasa_asmbl_45717.p1, terminal, 156784, 156803
-recovered pasa_asmbl_45717.p1, internal, 155092, 155205
-recovered pasa_asmbl_45717.p1, internal, 155304, 155373
-recovered pasa_asmbl_45717.p1, internal, 155479, 155577
-recovered pasa_asmbl_45717.p1, internal, 155651, 155740
-recovered pasa_asmbl_45717.p1, internal, 156073, 156129
-recovered pasa_asmbl_45717.p1, internal, 156223, 156250
Couldn't classify 147215, 147296
Sorry, prediction CodingQuarry_transcript_52242-T1 fails validation.
(ATG)	 AG	147072-147157	GT	CTG
(GTG)	 TG	147215-147296	TA	GAT
-recovered CodingQuarry_transcript_52242-T1, initial, 147072, 147157
-recovered CodingQuarry_transcript_52242-T1, internal, 147072, 147157
Valid prediction for snap_scaffold_5-snap.2044-T1
Valid prediction for Augustus_model.g8346.t1
Valid prediction for snap_scaffold_5-snap.2031-T1
Valid prediction for GlimmerHMM_glimmerT_12613-T1
Valid prediction for snap_scaffold_5-snap.2019-T1
Valid prediction for Augustus_model.g8341.t1
Valid prediction for snap_scaffold_5-snap.2014-T1
Valid prediction for Augustus_model.g8342.t1
Couldn't classify 79172, 79316
Sorry, prediction pasa_asmbl_46362.p1 fails validation.
(CCC)	 AA	79172-79316	GT	ATG
(CCC)	 AG	79432-79570	GT	AAG
(GTT)	 AG	79653-79701	CA	AAC
-recovered pasa_asmbl_46362.p1, terminal, 79653, 79701
-recovered pasa_asmbl_46362.p1, internal, 79432, 79570
Valid prediction for GlimmerHMM_glimmerT_12611-T1
Valid prediction for snap_scaffold_5-snap.2028-T1
Valid prediction for snap_scaffold_5-snap.2030-T1
Valid prediction for snap_scaffold_5-snap.2043-T1
Valid prediction for GlimmerHMM_glimmerT_12594-T1
Valid prediction for GlimmerHMM_glimmerT_12604-T1
Couldn't classify 62164, 62258
Sorry, prediction pasa_asmbl_45705.p1 fails validation.
(AGA)	 CC	62164-62258	GT	GCG
(TGA)	 AG	62375-62466	GT	AGG
(GTG)	 AG	62544-62623	GT	AGG
(GTG)	 AG	62741-62860	GC	AAG
add_exon() Sorry, pasa_asmbl_45705.p1 62375-62466-terminal-2 is invalid.
-recovered pasa_asmbl_45705.p1, terminal, 62375, 62466
-recovered pasa_asmbl_45705.p1, terminal, 62741, 62860
-recovered pasa_asmbl_45705.p1, internal, 62375, 62466
-recovered pasa_asmbl_45705.p1, internal, 62544, 62623
-recovered pasa_asmbl_45705.p1, internal, 62741, 62860
Valid prediction for snap_scaffold_5-snap.2007-T1
Valid prediction for snap_scaffold_5-snap.2037-T1
Valid prediction for snap_scaffold_5-snap.2024-T1
Valid prediction for CodingQuarry_transcript_52234-T1
Valid prediction for GlimmerHMM_glimmerT_12599-T1
Valid prediction for Augustus_model.g8345.t1
Valid prediction for GlimmerHMM_glimmerT_12595-T1
Couldn't classify 171324, 171349
Sorry, prediction pasa_asmbl_45724.p1 fails validation.
(GAA)	 GG	171324-171349	GT	AGG
(TCT)	 AG	171446-171581	GT	TGG
(ACG)	 AG	171675-171821	GT	AGG
(GAT)	 AG	172063-172316	GT	GAG
(GAT)	 AG	172460-172603	GT	GGG
(GTA)	 AG	172703-172862	AG	GAA
-recovered pasa_asmbl_45724.p1, terminal, 172703, 172862
-recovered pasa_asmbl_45724.p1, internal, 171446, 171581
-recovered pasa_asmbl_45724.p1, internal, 171675, 171821
-recovered pasa_asmbl_45724.p1, internal, 172063, 172316
-recovered pasa_asmbl_45724.p1, internal, 172460, 172603
Valid prediction for GlimmerHMM_glimmerT_12603-T1
Valid prediction for snap_scaffold_5-snap.2029-T1
Valid prediction for CodingQuarry_transcript_52235-T1
Valid prediction for CodingQuarry_transcript_52231-T1
Valid prediction for snap_scaffold_5-snap.2015-T1
Valid prediction for HiQ_model.g8334.t1
Valid prediction for GlimmerHMM_glimmerT_12620-T1
Valid prediction for Augustus_model.g8344.t1
Valid prediction for GlimmerHMM_glimmerT_12617-T1
Valid prediction for GlimmerHMM_glimmerT_12608-T1
Valid prediction for snap_scaffold_5-snap.2042-T1
Valid prediction for snap_scaffold_5-snap.2046-T1
Couldn't classify 169986, 170049
Couldn't classify 171066, 171194
Sorry, prediction pasa_asmbl_45723.p1 fails validation.
(ACA)	 CC	169986-170049	GT	ATG
(CGC)	 AG	170171-170326	GT	CGG
(ATC)	 AG	170495-170655	GT	AAG
(GTG)	 AG	170869-170925	GT	AGG
(CCC)	 AG	171066-171194	CA	CCC
-recovered pasa_asmbl_45723.p1, internal, 170171, 170326
-recovered pasa_asmbl_45723.p1, internal, 170495, 170655
-recovered pasa_asmbl_45723.p1, internal, 170869, 170925
Valid prediction for snap_scaffold_5-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_12614-T1
Valid prediction for Augustus_model.g8343.t1
Valid prediction for pasa_asmbl_45699.p1
Valid prediction for snap_scaffold_5-snap.2034-T1
Valid prediction for GlimmerHMM_glimmerT_12602-T1
Couldn't classify 148624, 150235
Sorry, prediction pasa_asmbl_45712.p1 fails validation.
(GCC)	 CA	148624-150235	GT	GGG
(GTT)	 AG	150940-151025	GT	AGG
(CTT)	 AG	151327-151404	GT	AGG
(GCT)	 AG	151894-152040	GT	AGG
(ATC)	 AG	152153-152281	GT	AGG
(GTT)	 AG	152440-152562	GT	TGG
(GAA)	 AG	152796-152810	GG	GAG
-recovered pasa_asmbl_45712.p1, terminal, 152796, 152810
-recovered pasa_asmbl_45712.p1, internal, 150940, 151025
-recovered pasa_asmbl_45712.p1, internal, 151327, 151404
-recovered pasa_asmbl_45712.p1, internal, 151894, 152040
-recovered pasa_asmbl_45712.p1, internal, 152153, 152281
-recovered pasa_asmbl_45712.p1, internal, 152440, 152562
Valid prediction for pasa_asmbl_45706.p1
Valid prediction for snap_scaffold_5-snap.2027-T1
Couldn't classify 169402, 169659
Couldn't classify 169767, 169817
Sorry, prediction pasa_asmbl_45722.p1 fails validation.
(TGG)	 AC	169402-169659	GT	AGG
(TCT)	 AG	169767-169817	TC	AGT
Couldn't classify 153656, 153657
Sorry, prediction CodingQuarry_transcript_52244-T1 fails validation.
(ATG)	 TC	153656-153657	GT	ATG
(GCA)	 AG	155092-155205	GT	AGG
(TTG)	 AG	155304-155373	GT	ATG
(GAG)	 AG	155479-155577	GT	AGG
(TTA)	 AG	155651-155740	GT	AGG
(ATG)	 AG	156073-156129	GT	ATG
(GAT)	 AG	156223-156250	GT	AAG
(AAA)	 AG	156784-156803	AA	GAA
-recovered CodingQuarry_transcript_52244-T1, initial, 156073, 156129
-recovered CodingQuarry_transcript_52244-T1, terminal, 156784, 156803
-recovered CodingQuarry_transcript_52244-T1, internal, 155092, 155205
-recovered CodingQuarry_transcript_52244-T1, internal, 155304, 155373
-recovered CodingQuarry_transcript_52244-T1, internal, 155479, 155577
-recovered CodingQuarry_transcript_52244-T1, internal, 155651, 155740
-recovered CodingQuarry_transcript_52244-T1, internal, 156073, 156129
-recovered CodingQuarry_transcript_52244-T1, internal, 156223, 156250
Valid prediction for Augustus_model.g8333.t1
Valid prediction for snap_scaffold_5-snap.2022-T1
Valid prediction for snap_scaffold_5-snap.2010-T1
Couldn't classify 167837, 167925
Couldn't classify 168623, 168643
Sorry, prediction pasa_asmbl_45721.p1 fails validation.
(AAA)	 CC	167837-167925	GT	AGG
(TGA)	 AG	168144-168218	GT	AAG
(GCT)	 AG	168367-168538	GT	ACG
(AGC)	 AG	168623-168643	AC	CCA
-recovered pasa_asmbl_45721.p1, internal, 168144, 168218
-recovered pasa_asmbl_45721.p1, internal, 168367, 168538
Valid prediction for HiQ_model.g8330.t1
Valid prediction for GlimmerHMM_glimmerT_12609-T1
Valid prediction for Augustus_model.g8332.t1
Valid prediction for snap_scaffold_5-snap.2018-T1
Couldn't classify 141743, 141783
Couldn't classify 142503, 142612
Couldn't classify 142717, 142808
Sorry, prediction pasa_asmbl_45709.p1 fails validation.
(ATT)	 AT	141743-141783	GT	AGG
(TGC)	 AG	141882-141955	GT	AGG
(AGG)	 AG	142059-142195	GT	AGG
(GGT)	 AG	142351-142409	GT	AAG
(AGA)	 AG	142503-142612	AT	AGA
(ATA)	 AC	142717-142808	GT	ATG
(GCA)	 AG	142896-143028	GT	AGG
(GGC)	 AG	143143-143212	GT	AGG
(TCT)	 AG	143317-143417	GT	AGG
(ACT)	 AG	143625-143723	GT	TGG
(ATA)	 AG	143809-143828	GT	GAG
-recovered pasa_asmbl_45709.p1, terminal, 143809, 143828
-recovered pasa_asmbl_45709.p1, internal, 141882, 141955
-recovered pasa_asmbl_45709.p1, internal, 142059, 142195
-recovered pasa_asmbl_45709.p1, internal, 142351, 142409
-recovered pasa_asmbl_45709.p1, internal, 142896, 143028
-recovered pasa_asmbl_45709.p1, internal, 143143, 143212
-recovered pasa_asmbl_45709.p1, internal, 143317, 143417
-recovered pasa_asmbl_45709.p1, internal, 143625, 143723
-recovered pasa_asmbl_45709.p1, internal, 143809, 143828
Valid prediction for GlimmerHMM_glimmerT_12621-T1
Valid prediction for snap_scaffold_5-snap.2039-T1
Valid prediction for snap_scaffold_5-snap.2040-T1
Valid prediction for GlimmerHMM_glimmerT_12607-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_12615-T1
Valid prediction for snap_scaffold_5-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_12616-T1
Valid prediction for CodingQuarry_transcript_52236-T1
Couldn't classify 116377, 116439
Sorry, prediction pasa_asmbl_44394.p3 fails validation.
(ACG)	 GC	116377-116439	GT	AGG
(GGT)	 AG	116714-116959	AT	GAA
-recovered pasa_asmbl_44394.p3, terminal, 116714, 116959
Valid prediction for snap_scaffold_5-snap.2008-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_5-snap.2023-T1
Valid prediction for Augustus_model.g8329.t1
Valid prediction for pasa_asmbl_44401.p1
Valid prediction for pasa_asmbl_44384.p1
Valid prediction for snap_scaffold_5-snap.2003-T1
Valid prediction for Augustus_model.g8331.t1
Valid prediction for snap_scaffold_5-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_12612-T1
Valid prediction for Augustus_model.g8347.t1
Valid prediction for GlimmerHMM_glimmerT_12596-T1
Valid prediction for snap_scaffold_5-snap.2011-T1
Valid prediction for HiQ_model.g8339.t1
Valid prediction for snap_scaffold_5-snap.2016-T1
Valid prediction for GlimmerHMM_glimmerT_12610-T1
Valid prediction for snap_scaffold_5-snap.2020-T1
Valid prediction for GlimmerHMM_glimmerT_12606-T1
Valid prediction for GlimmerHMM_glimmerT_12601-T1
Valid prediction for GlimmerHMM_glimmerT_12593-T1
Valid prediction for snap_scaffold_5-snap.2032-T1
Valid prediction for pasa_asmbl_44381.p1
Couldn't classify 47416, 47460
Couldn't classify 47821, 47939
Sorry, prediction pasa_asmbl_45003.p1 fails validation.
(CCC)	 CG	47416-47460	GT	AGG
(CTG)	 AG	47583-47715	GT	AGG
(GGA)	 AG	47821-47939	AA	AGA
-recovered pasa_asmbl_45003.p1, internal, 47583, 47715
Valid prediction for snap_scaffold_5-snap.2017-T1
Valid prediction for snap_scaffold_5-snap.2038-T1
Valid prediction for Augustus_model.g8348.t1
Valid prediction for Augustus_model.g8340.t1
Valid prediction for GlimmerHMM_glimmerT_12618-T1
Valid prediction for snap_scaffold_5-snap.2025-T1
Valid prediction for Augustus_model.g8337.t1
Valid prediction for snap_scaffold_5-snap.2045-T1
Valid prediction for HiQ_model.g8335.t1
Valid prediction for CodingQuarry_transcript_52232-T1
Valid prediction for snap_scaffold_5-snap.2047-T1
Valid prediction for GlimmerHMM_glimmerT_12622-T1
Valid prediction for CodingQuarry_transcript_52237-T1
Couldn't classify 128451, 128464
Sorry, prediction CodingQuarry_transcript_52239-T1 fails validation.
(ATG)	 AG	125738-125904	GT	AGG
(AGA)	 AG	125994-126095	GT	AGG
(AAG)	 AG	126202-126295	GT	AAG
(GTC)	 AG	126404-126469	GT	AGG
(CCC)	 AG	126576-126714	GT	GGG
(AGG)	 AG	126819-126952	GT	AGG
(GAG)	 AG	127055-127167	GT	ATG
(TTA)	 AG	127262-127405	GT	GAG
(AGT)	 AG	127521-127746	GT	AGG
(GAA)	 AG	127877-128022	GT	CGG
(GAT)	 AG	128190-128359	GC	GGG
(CTG)	 TT	128451-128464	TT	AAT
-recovered CodingQuarry_transcript_52239-T1, initial, 125738, 125904
-recovered CodingQuarry_transcript_52239-T1, internal, 125738, 125904
-recovered CodingQuarry_transcript_52239-T1, internal, 125994, 126095
-recovered CodingQuarry_transcript_52239-T1, internal, 126202, 126295
-recovered CodingQuarry_transcript_52239-T1, internal, 126404, 126469
-recovered CodingQuarry_transcript_52239-T1, internal, 126576, 126714
-recovered CodingQuarry_transcript_52239-T1, internal, 126819, 126952
-recovered CodingQuarry_transcript_52239-T1, internal, 127055, 127167
-recovered CodingQuarry_transcript_52239-T1, internal, 127262, 127405
-recovered CodingQuarry_transcript_52239-T1, internal, 127521, 127746
-recovered CodingQuarry_transcript_52239-T1, internal, 127877, 128022
-recovered CodingQuarry_transcript_52239-T1, internal, 128190, 128359
Couldn't classify 50481, 50568
Sorry, prediction pasa_asmbl_44398.p1 fails validation.
(ATG)	 GT	49983-50055	GT	TGG
(GGA)	 AG	50198-50378	GT	AGG
(CTC)	 AG	50481-50568	GG	GAG
-recovered pasa_asmbl_44398.p1, initial, 49983, 50055
-recovered pasa_asmbl_44398.p1, internal, 50198, 50378
Valid prediction for snap_scaffold_5-snap.2041-T1
Valid prediction for snap_scaffold_5-snap.2036-T1
Valid prediction for HiQ_model.g8350.t1
Couldn't classify 46813, 47199
Sorry, prediction pasa_asmbl_44399.p1 fails validation.
(TTG)	 TG	46813-47199	CC	GAC
Valid prediction for Augustus_model.g8336.t1
Valid prediction for snap_scaffold_5-snap.2048-T1
Valid prediction for snap_scaffold_5-snap.2026-T1
Valid prediction for CodingQuarry_transcript_52240-T1
Valid prediction for snap_scaffold_5-snap.2021-T1
Valid prediction for snap_scaffold_5-snap.2013-T1
Valid prediction for GlimmerHMM_glimmerT_12600-T1
Valid prediction for snap_scaffold_5-snap.2035-T1
Valid prediction for snap_scaffold_5-snap.2033-T1
Valid prediction for snap_scaffold_5-snap.2004-T1
Couldn't classify 165307, 165314
Couldn't classify 166087, 166161
Sorry, prediction pasa_asmbl_44390.p1 fails validation.
(GAC)	 CA	165307-165314	GT	TGG
(CCC)	 AG	165398-165530	GT	AGG
(GCC)	 AG	165672-165935	GT	AGG
(ATC)	 AG	166087-166161	CT	GCC
-recovered pasa_asmbl_44390.p1, internal, 165398, 165530
-recovered pasa_asmbl_44390.p1, internal, 165672, 165935
Valid prediction for CodingQuarry_transcript_52245-T1
Valid prediction for GlimmerHMM_glimmerT_12605-T1
Valid prediction for pasa_asmbl_44392.p1
Valid prediction for GlimmerHMM_glimmerT_12619-T1
Valid prediction for Augustus_model.g8349.t1
Couldn't classify 48500, 48609
Couldn't classify 49067, 49288
Sorry, prediction pasa_asmbl_45048.p1 fails validation.
(GGC)	 CA	48500-48609	GT	AGG
(ACG)	 AG	48712-48883	GT	AGG
(GGC)	 AG	49067-49288	GG	GGG
-recovered pasa_asmbl_45048.p1, internal, 48712, 48883

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 57085, rend_intergenic: 46444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61580, rend_intergenic: 59521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91915, rend_intergenic: 86480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95573, rend_intergenic: 93457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113482, rend_intergenic: 110304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172862, rend_intergenic: 163368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178124, rend_intergenic: 177141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181217, rend_intergenic: 178472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194592, rend_intergenic: 184415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210302, rend_intergenic: 204602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211945, rend_intergenic: 210418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223434, rend_intergenic: 212037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227992, rend_intergenic: 223526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232727, rend_intergenic: 229517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 249909
-exon list size: 626


building trellis

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99.0    
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99.5    
99.7    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 57085, rend_intergenic: 46444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61580, rend_intergenic: 59521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91915, rend_intergenic: 86480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95573, rend_intergenic: 93457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113482, rend_intergenic: 110304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172862, rend_intergenic: 163368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178124, rend_intergenic: 177141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181217, rend_intergenic: 178472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194592, rend_intergenic: 184415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210302, rend_intergenic: 204602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211945, rend_intergenic: 210418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223434, rend_intergenic: 212037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227992, rend_intergenic: 223526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232727, rend_intergenic: 229517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support