-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_499

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 166, 252
Sorry, prediction snap_scaffold_499-snap.2-T1 fails validation.
(GGG)	 AG	166-252	GT	CGG
(GTG)	 AG	950-1025	GT	CGG
(GGC)	 AG	1707-1836	GG	GAG
-recovered snap_scaffold_499-snap.2-T1, terminal, 1707, 1836
-recovered snap_scaffold_499-snap.2-T1, internal, 166, 252
-recovered snap_scaffold_499-snap.2-T1, internal, 950, 1025

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40001.t1
Valid prediction for snap_scaffold_499-snap.3-T1
Valid prediction for snap_scaffold_499-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60428-T1
Valid prediction for GlimmerHMM_glimmerT_60427-T1
Valid prediction for GlimmerHMM_glimmerT_60426-T1
Valid prediction for snap_scaffold_499-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1642, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6447
-exon list size: 23


building trellis

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96.0    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 1642, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support