-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_497

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_497-snap.1-T1
Couldn't classify 4221, 4391
Sorry, prediction GlimmerHMM_glimmerT_60424-T1 fails validation.
(ATG)	 TT	102-859	GT	CTG
(ACT)	 AG	1069-1236	GT	AGG
(ACT)	 AG	3657-3827	GT	AGG
(GTT)	 AG	4221-4391	GT	AGG
-recovered GlimmerHMM_glimmerT_60424-T1, initial, 102, 859
-recovered GlimmerHMM_glimmerT_60424-T1, internal, 1069, 1236
-recovered GlimmerHMM_glimmerT_60424-T1, internal, 3657, 3827
-recovered GlimmerHMM_glimmerT_60424-T1, internal, 4221, 4391
Couldn't classify 1, 859
Sorry, prediction Augustus_model.g39999.t1 fails validation.
(ACA)	 GA	1-859	GT	CTG
(ACT)	 AG	1069-1236	GT	AGG
(ACT)	 AG	3657-3827	GT	AGG
(GTT)	 AG	4221-4425	CT	AGC
-recovered Augustus_model.g39999.t1, terminal, 4221, 4425
-recovered Augustus_model.g39999.t1, internal, 1069, 1236
-recovered Augustus_model.g39999.t1, internal, 3657, 3827
Valid prediction for snap_scaffold_497-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6466
-exon list size: 8


building trellis

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-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support