-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_493

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4226, 6341
Sorry, prediction GlimmerHMM_glimmerT_60420-T1 fails validation.
(ATG)	 CG	3538-4167	GT	GTG
(GAA)	 AG	4226-6341	GT	AGG
-recovered GlimmerHMM_glimmerT_60420-T1, initial, 3538, 4167
-recovered GlimmerHMM_glimmerT_60420-T1, internal, 4226, 6341
Valid prediction for Augustus_model.g39995.t1
Valid prediction for GlimmerHMM_glimmerT_60419-T1
Valid prediction for Augustus_model.g39994.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_493-snap.2-T1
Valid prediction for snap_scaffold_493-snap.1-T1
Valid prediction for snap_scaffold_493-snap.3-T1
Valid prediction for snap_scaffold_493-snap.5-T1
Valid prediction for snap_scaffold_493-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6497
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support